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BASP1
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  • BASP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:80.7 nTPM
FANTOM5:392.7 Scaled Tags Per Million
Pig:102.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA045218Antibody HPA050333
Glial cells HighHigh
Neuronal cells HighLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 80.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 80.7
Samples: 246

Max nTPM: 385.7
Min nTPM: 15.9
Std nTPM: 45.0
Median nTPM: 75.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 385.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 316.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 238.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 171.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 170.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 169.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 168.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 160.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 153.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 150.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 149.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 148.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 142.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 141.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 140.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 138.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 138.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 135.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 135.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 134.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 134.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 132.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 132.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 131.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 131.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 131.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 131.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 131.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 128.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 128.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 128.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 127.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 126.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 125.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 124.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 123.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 123.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 122.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 121.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 121.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 120.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 119.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 118.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 117.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 116.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 116.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 114.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 113.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 113.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 113.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 112.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 112.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 111.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 110.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 108.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 108.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 106.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 106.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 106.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 105.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 105.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 104.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 103.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 102.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 102.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 102.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 102.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 101.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 101.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 100.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 100.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 99.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 99.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 98.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 98.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 98.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 96.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 96.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 96.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 96.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 95.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 95.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 95.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 95.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 95.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 94.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 94.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 93.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 93.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 93.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 92.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 91.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 91.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 90.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 89.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 89.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 88.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 88.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 88.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 87.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 87.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 85.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 85.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 85.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 84.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 84.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 84.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 83.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 82.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 82.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 80.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 79.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 79.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 79.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 79.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 78.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 77.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 77.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 77.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 77.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 77.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 76.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 76.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 75.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 75.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 74.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 74.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 74.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 72.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 72.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 72.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 71.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 71.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 71.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 70.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 69.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 68.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 68.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 67.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 66.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 65.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 65.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 65.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 64.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 64.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 63.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 63.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 63.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 61.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 61.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 61.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 60.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 59.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 59.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 58.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 57.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 57.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 57.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 57.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 57.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 57.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 56.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 55.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 55.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 55.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 54.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 54.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 54.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 53.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 52.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 52.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 52.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 52.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 51.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 51.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 49.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 49.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 49.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 49.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 48.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 48.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 48.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 48.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 47.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 46.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 45.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 45.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 45.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 45.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 45.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 45.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 44.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 44.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 43.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 43.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 43.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 43.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 42.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 41.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 41.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 40.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 40.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 40.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 40.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 39.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 39.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 39.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 39.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 38.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 38.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 37.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 37.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 36.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 36.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 35.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 34.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 34.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 34.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 33.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 33.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 32.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 31.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 30.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 30.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 30.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 29.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 29.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 28.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 28.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 28.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 27.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 27.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 26.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 25.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 25.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 24.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 24.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 24.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 23.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 23.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 23.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 22.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 18.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 18.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 15.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 392.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 392.7
FF:10164-103B2 76 years, female 392.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 102.3
Pig sample Sample description nTPM
Caudate
nTPM: 102.3
Samples: 4

Max nTPM: 113.6
Min nTPM: 84.9
Sample A Female 104.7
Sample B Female 105.9
Sample C Male 113.6
Sample D Male 84.9

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