BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.9 nTPM
HPA:6.9 nTPM
GTEx:18.4 nTPM
FANTOM5:7.8 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:10.0 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA023792
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.7
2481 Female, age 94, left hemisphere 7.1
1781 Male, age 74, unknown 6.1
2289 Male, age 61, right hemisphere 6.1
2846 Female, age 79, unknown 5.9
1857 Female, age 85, left hemisphere 5.7
2290 Female, age 72, unknown 5.5
1854 Male, age 80, left hemisphere 5.3
2288 Male, age 75, left hemisphere 4.1
Claustrum
nTPM: 5.6
2196 Female, age 79, unknown 8.2
2292 Female, age 85, both hemispheres 7.2
2645 Female, age 72, unknown 6.6
2198 Male, age 80, both hemispheres 6.2
2284 Female, age 91, both hemispheres 5.0
2568 Male, age 61, both hemispheres 4.9
1956 Male, age 74, unknown 4.5
2392 Female, age 94, both hemispheres 4.3
2491 Male, age 75, both hemispheres 3.4
Globus pallidus, externus
nTPM: 6.9
2772 Female, age 79, unknown 7.4
2395 Male, age 75, both hemispheres 6.9
2567 Female, age 72, unknown 6.9
1996 Male, age 80, right hemisphere 6.8
2646 Male, age 61, right hemisphere 6.6
Globus pallidus, internus
nTPM: 5.9
2483 Female, age 94, right hemisphere 7.9
1818 Male, age 74, unknown 6.4
2037 Male, age 80, right hemisphere 6.1
2566 Female, age 72, unknown 5.7
2111 Female, age 85, right hemisphere 5.3
2778 Female, age 91, both hemispheres 5.2
2287 Male, age 75, right hemisphere 4.9
Nucleus accumbens
nTPM: 5.1
2732 Male, age 80, right hemisphere 6.3
1806 Female, age 85, left hemisphere 5.8
2824 Male, age 61, right hemisphere 5.3
2391 Female, age 94, left hemisphere 4.9
2286 Male, age 75, left hemisphere 4.8
1783 Male, age 74, unknown 4.6
1856 Female, age 91, right hemisphere 4.5
2698 Female, age 72, unknown 4.3
Nucleus basalis of Meynert
nTPM: 6.6
2821 Male, age 75, both hemispheres 7.9
2569 Male, age 61, both hemispheres 7.7
2484 Female, age 94, left hemisphere 5.9
2393 Male, age 80, right hemisphere 4.7
Nucleus of the diagonal band
nTPM: 5.3
1979 Male, age 74, unknown 5.9
2195 Female, age 85, both hemispheres 5.6
2775 Male, age 80, right hemisphere 5.6
1812 Female, age 91, both hemispheres 4.8
2029 Male, age 61, right hemisphere 4.7
Olfactory tubercle
nTPM: 5.0
1846 Male, age 80, right hemisphere 5.5
1998 Female, age 91, both hemispheres 4.9
2487 Female, age 94, left hemisphere 4.9
2856 Male, age 75, right hemisphere 4.8
Putamen
nTPM: 5.8
2647 Male, age 75, left hemisphere 7.2
2482 Female, age 94, left hemisphere 7.1
2489 Female, age 72, unknown 6.6
2466 Female, age 79, unknown 5.8
1937 Female, age 91, right hemisphere 5.4
1838 Male, age 80, right hemisphere 4.5
1829 Male, age 74, unknown 4.2
Septal nuclei
nTPM: 6.2
2059 Female, age 85, both hemispheres 8.1
1960 Male, age 74, unknown 7.2
2199 Male, age 80, right hemisphere 7.1
2009 Female, age 91, both hemispheres 5.6
2031 Female, age 72, unknown 5.6
2394 Male, age 61, left hemisphere 5.3
2629 Female, age 94, right hemisphere 4.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.6
Samples: 246

Max nTPM: 62.5
Min nTPM: 4.8
Std nTPM: 8.2
Median nTPM: 15.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 62.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 47.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 46.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 42.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 40.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 38.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 38.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 37.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 36.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 35.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.2
Samples: 246

Max nTPM: 60.8
Min nTPM: 4.8
Std nTPM: 9.4
Median nTPM: 14.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 60.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 52.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 48.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 48.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 47.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 44.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 44.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 43.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 42.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 39.6
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 39.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 18.4
Samples: 205

Max nTPM: 56.7
Min nTPM: 4.6
Std nTPM: 8.3
Median nTPM: 16.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 56.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 46.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 46.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 43.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 39.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 38.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 37.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 36.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 36.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 35.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 35.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.1
FF:10164-103B2 76 years, female 7.1
Globus pallidus
Scaled Tags Per Million: 5.3
FF:10175-103C4 60 years, female 6.3
FF:10161-103A8 76 years, female 4.3
Nucleus accumbens
Scaled Tags Per Million: 4.4
FF:10037-101F1 23-56 years, mixed 4.4
Putamen
Scaled Tags Per Million: 7.8
FF:10176-103C5 60 years, female 7.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Caudate
nTPM: 9.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 11.6
Sample C Male 11.5
Sample D Male 8.6
Putamen
nTPM: 13.8
Samples: 4

Max nTPM: 18.9
Min nTPM: 11.3
Sample A Female 11.6
Sample B Female 13.2
Sample C Male 18.9
Sample D Male 11.3
Septum
nTPM: 8.7
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 7.9
Sample C Male 11.5
Sample D Male 8.2
Ventral pallidum
nTPM: 9.1
Samples: 4

Max nTPM: 12.9
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 12.9
Sample C Male 11.8
Sample D Male 5.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.8
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.0
Sample A Male 5.7
Sample B Male 4.0
Sample C Female 5.5
Sample D Female 4.0
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 11.3
Min nTPM: 9.1
Sample A Male 9.1
Sample B Male 10.1
Sample C Female 11.3
Sample D Female 9.5
Ventral forebrain
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.5
Sample A Male 4.5
Sample B Male 6.7
Sample C Female 6.4
Sample D Female 5.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68633363 Antisense, RP_050125_02_G03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68633363 Antisense, RP_050125_02_G03, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.