BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2.0 nTPM
HPA:2.0 nTPM
GTEx:2.9 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:4.7 nTPM
Mouse:2.2 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.9
1781 Male, age 74, unknown 1.9
2288 Male, age 75, left hemisphere 1.4
2289 Male, age 61, right hemisphere 1.3
2290 Female, age 72, unknown 1.2
2481 Female, age 94, left hemisphere 0.7
1854 Male, age 80, left hemisphere 0.6
2846 Female, age 79, unknown 0.3
1857 Female, age 85, left hemisphere 0.0
Claustrum
nTPM: 2.0
2645 Female, age 72, unknown 3.3
2568 Male, age 61, both hemispheres 2.7
2284 Female, age 91, both hemispheres 2.2
2491 Male, age 75, both hemispheres 2.2
2198 Male, age 80, both hemispheres 2.0
2292 Female, age 85, both hemispheres 1.7
2196 Female, age 79, unknown 1.5
1956 Male, age 74, unknown 1.2
2392 Female, age 94, both hemispheres 0.7
Globus pallidus, externus
nTPM: 0.7
2646 Male, age 61, right hemisphere 2.4
2567 Female, age 72, unknown 1.1
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.2
2566 Female, age 72, unknown 0.8
2778 Female, age 91, both hemispheres 0.4
1818 Male, age 74, unknown 0.2
2111 Female, age 85, right hemisphere 0.2
2037 Male, age 80, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.5
1783 Male, age 74, unknown 1.6
2824 Male, age 61, right hemisphere 0.7
2286 Male, age 75, left hemisphere 0.5
2732 Male, age 80, right hemisphere 0.4
1806 Female, age 85, left hemisphere 0.3
1856 Female, age 91, right hemisphere 0.2
2391 Female, age 94, left hemisphere 0.1
2698 Female, age 72, unknown 0.0
Nucleus basalis of Meynert
nTPM: 0.8
2569 Male, age 61, both hemispheres 2.1
2484 Female, age 94, left hemisphere 0.5
2393 Male, age 80, right hemisphere 0.4
2821 Male, age 75, both hemispheres 0.3
Nucleus of the diagonal band
nTPM: 1.6
2195 Female, age 85, both hemispheres 3.4
2029 Male, age 61, right hemisphere 2.3
2775 Male, age 80, right hemisphere 1.1
1812 Female, age 91, both hemispheres 0.5
1979 Male, age 74, unknown 0.5
Olfactory tubercle
nTPM: 1.5
1998 Female, age 91, both hemispheres 1.9
2856 Male, age 75, right hemisphere 1.9
1846 Male, age 80, right hemisphere 1.5
2487 Female, age 94, left hemisphere 0.8
Putamen
nTPM: 1.0
2489 Female, age 72, unknown 2.6
2647 Male, age 75, left hemisphere 1.5
1838 Male, age 80, right hemisphere 1.2
2466 Female, age 79, unknown 1.0
1829 Male, age 74, unknown 0.6
1937 Female, age 91, right hemisphere 0.3
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 1.2
2059 Female, age 85, both hemispheres 2.4
1960 Male, age 74, unknown 2.3
2629 Female, age 94, right hemisphere 1.2
2009 Female, age 91, both hemispheres 1.0
2031 Female, age 72, unknown 0.9
2394 Male, age 61, left hemisphere 0.3
2199 Male, age 80, right hemisphere 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.9
Samples: 246

Max nTPM: 6.6
Min nTPM: 0.3
Std nTPM: 0.8
Median nTPM: 2.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 6.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 5.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 5.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 5.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 4.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 4.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 4.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 4.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 4.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 4.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 4.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.7
Samples: 246

Max nTPM: 5.0
Min nTPM: 0.5
Std nTPM: 0.8
Median nTPM: 2.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 5.0
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 4.6
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 4.6
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 4.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 4.5
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 4.4
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 4.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 4.3
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 4.2
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 4.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 4.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 2.8
Samples: 205

Max nTPM: 7.6
Min nTPM: 0.8
Std nTPM: 0.9
Median nTPM: 2.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 7.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 6.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 5.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 5.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 5.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 4.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 4.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 4.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 4.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 4.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 4.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.3
FF:10164-103B2 76 years, female 2.3
Globus pallidus
Scaled Tags Per Million: 0.8
FF:10161-103A8 76 years, female 1.6
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 4.0
FF:10037-101F1 23-56 years, mixed 4.0
Putamen
Scaled Tags Per Million: 1.2
FF:10176-103C5 60 years, female 1.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.7
Pig sample Sample description nTPM
Caudate
nTPM: 4.7
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 5.0
Sample C Male 5.0
Sample D Male 4.7
Putamen
nTPM: 3.8
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 3.6
Sample C Male 3.3
Sample D Male 5.2
Septum
nTPM: 3.6
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.1
Sample A Female 3.7
Sample B Female 4.3
Sample C Male 3.1
Sample D Male 3.1
Ventral pallidum
nTPM: 4.0
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.3
Sample A Female 4.3
Sample B Female 3.9
Sample C Male 3.3
Sample D Male 4.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.9
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.5
Sample A Male 2.5
Sample B Male 1.9
Sample C Female 1.5
Sample D Female 1.8
Septum
nTPM: 1.7
Samples: 4

Max nTPM: 2.4
Min nTPM: 0.9
Sample A Male 2.1
Sample B Male 2.4
Sample C Female 0.9
Sample D Female 1.3
Ventral forebrain
nTPM: 2.2
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.2
Sample A Male 2.6
Sample B Male 1.8
Sample C Female 3.1
Sample D Female 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.