BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:43.2 nTPM
HPA:43.2 nTPM
GTEx:83.2 nTPM
FANTOM5:108.1 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:14.8 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA021282Antibody CAB025541
Glial cells LowMedium
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.1
2289 Male, age 61, right hemisphere 46.3
2290 Female, age 72, unknown 45.1
1781 Male, age 74, unknown 41.9
2288 Male, age 75, left hemisphere 41.2
1857 Female, age 85, left hemisphere 41.0
2846 Female, age 79, unknown 40.9
2481 Female, age 94, left hemisphere 40.5
1854 Male, age 80, left hemisphere 40.2
Claustrum
nTPM: 39.0
2491 Male, age 75, both hemispheres 42.0
2292 Female, age 85, both hemispheres 40.6
2198 Male, age 80, both hemispheres 40.2
2284 Female, age 91, both hemispheres 39.8
2568 Male, age 61, both hemispheres 39.8
2196 Female, age 79, unknown 39.0
2645 Female, age 72, unknown 38.4
1956 Male, age 74, unknown 37.6
2392 Female, age 94, both hemispheres 33.9
Globus pallidus, externus
nTPM: 41.3
1996 Male, age 80, right hemisphere 44.3
2646 Male, age 61, right hemisphere 43.8
2772 Female, age 79, unknown 42.5
2395 Male, age 75, both hemispheres 39.0
2567 Female, age 72, unknown 36.8
Globus pallidus, internus
nTPM: 40.6
2111 Female, age 85, right hemisphere 45.4
2778 Female, age 91, both hemispheres 42.1
2287 Male, age 75, right hemisphere 40.4
2483 Female, age 94, right hemisphere 40.3
1818 Male, age 74, unknown 40.0
2037 Male, age 80, right hemisphere 38.8
2566 Female, age 72, unknown 37.0
Nucleus accumbens
nTPM: 43.2
1783 Male, age 74, unknown 47.3
1806 Female, age 85, left hemisphere 46.7
2824 Male, age 61, right hemisphere 46.6
2732 Male, age 80, right hemisphere 45.3
1856 Female, age 91, right hemisphere 43.6
2698 Female, age 72, unknown 41.9
2286 Male, age 75, left hemisphere 40.3
2391 Female, age 94, left hemisphere 34.0
Nucleus basalis of Meynert
nTPM: 39.9
2484 Female, age 94, left hemisphere 43.2
2569 Male, age 61, both hemispheres 42.3
2821 Male, age 75, both hemispheres 37.2
2393 Male, age 80, right hemisphere 37.0
Nucleus of the diagonal band
nTPM: 39.8
1979 Male, age 74, unknown 46.4
1812 Female, age 91, both hemispheres 40.5
2775 Male, age 80, right hemisphere 39.4
2195 Female, age 85, both hemispheres 38.5
2029 Male, age 61, right hemisphere 34.3
Olfactory tubercle
nTPM: 39.9
2487 Female, age 94, left hemisphere 42.2
1998 Female, age 91, both hemispheres 41.7
1846 Male, age 80, right hemisphere 38.2
2856 Male, age 75, right hemisphere 37.6
Putamen
nTPM: 40.8
2489 Female, age 72, unknown 43.9
2482 Female, age 94, left hemisphere 43.4
1937 Female, age 91, right hemisphere 42.0
2466 Female, age 79, unknown 40.7
1838 Male, age 80, right hemisphere 38.8
2647 Male, age 75, left hemisphere 38.5
1829 Male, age 74, unknown 38.3
Septal nuclei
nTPM: 40.8
2059 Female, age 85, both hemispheres 45.7
1960 Male, age 74, unknown 42.9
2394 Male, age 61, left hemisphere 42.8
2199 Male, age 80, right hemisphere 42.0
2009 Female, age 91, both hemispheres 38.4
2629 Female, age 94, right hemisphere 38.2
2031 Female, age 72, unknown 35.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 83.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 75.0
Samples: 246

Max nTPM: 134.9
Min nTPM: 27.2
Std nTPM: 15.9
Median nTPM: 74.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 134.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 115.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 113.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 112.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 110.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 109.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 108.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 107.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 106.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 106.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 104.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 83.2
Samples: 246

Max nTPM: 149.6
Min nTPM: 27.8
Std nTPM: 20.4
Median nTPM: 82.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 149.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 149.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 148.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 135.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 129.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 129.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 127.4
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 127.4
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 127.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 126.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 125.9
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Brain - Putamen (basal ganglia)
Average nTPM: 78.1
Samples: 205

Max nTPM: 131.1
Min nTPM: 41.3
Std nTPM: 16.0
Median nTPM: 78.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 131.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 115.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 114.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 111.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 109.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 106.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 105.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 105.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 105.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 104.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 104.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 108.1
FF:10164-103B2 76 years, female 108.1
Globus pallidus
Scaled Tags Per Million: 72.6
FF:10161-103A8 76 years, female 79.8
FF:10175-103C4 60 years, female 65.5
Nucleus accumbens
Scaled Tags Per Million: 60.8
FF:10037-101F1 23-56 years, mixed 60.8
Putamen
Scaled Tags Per Million: 89.6
FF:10176-103C5 60 years, female 89.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Caudate
nTPM: 20.9
Samples: 4

Max nTPM: 24.6
Min nTPM: 16.0
Sample A Female 16.0
Sample B Female 24.6
Sample C Male 22.2
Sample D Male 20.8
Putamen
nTPM: 22.7
Samples: 4

Max nTPM: 26.3
Min nTPM: 18.5
Sample A Female 23.7
Sample B Female 18.5
Sample C Male 22.1
Sample D Male 26.3
Septum
nTPM: 21.5
Samples: 4

Max nTPM: 29.2
Min nTPM: 18.1
Sample A Female 18.1
Sample B Female 18.8
Sample C Male 29.2
Sample D Male 19.9
Ventral pallidum
nTPM: 21.9
Samples: 4

Max nTPM: 29.1
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 22.6
Sample C Male 29.1
Sample D Male 21.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.0
Samples: 4

Max nTPM: 10.2
Min nTPM: 9.7
Sample A Male 10.2
Sample B Male 10.2
Sample C Female 9.7
Sample D Female 9.8
Septum
nTPM: 14.8
Samples: 4

Max nTPM: 17.7
Min nTPM: 11.9
Sample A Male 11.9
Sample B Male 16.0
Sample C Female 17.7
Sample D Female 13.7
Ventral forebrain
nTPM: 13.1
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.8
Sample A Male 10.8
Sample B Male 14.2
Sample C Female 15.8
Sample D Female 11.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
532673 Antisense, RP_040825_01_C08, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.5
532673 Antisense, RP_040825_01_C08, Mouse strain C57BL/6J (56 days, male) 0.5

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