BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:18.2 nTPM
HPA:18.2 nTPM
GTEx:19.3 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Mouse:16.4 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA067046
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.4
2289 Male, age 61, right hemisphere 21.2
1854 Male, age 80, left hemisphere 17.0
1781 Male, age 74, unknown 16.8
2481 Female, age 94, left hemisphere 16.0
2290 Female, age 72, unknown 15.8
2846 Female, age 79, unknown 15.5
1857 Female, age 85, left hemisphere 15.1
2288 Male, age 75, left hemisphere 13.7
Claustrum
nTPM: 17.3
2645 Female, age 72, unknown 20.0
2568 Male, age 61, both hemispheres 18.7
2392 Female, age 94, both hemispheres 17.8
1956 Male, age 74, unknown 17.3
2491 Male, age 75, both hemispheres 16.9
2284 Female, age 91, both hemispheres 16.8
2196 Female, age 79, unknown 16.5
2292 Female, age 85, both hemispheres 16.1
2198 Male, age 80, both hemispheres 15.5
Globus pallidus, externus
nTPM: 18.2
2567 Female, age 72, unknown 19.8
1996 Male, age 80, right hemisphere 19.1
2646 Male, age 61, right hemisphere 17.9
2772 Female, age 79, unknown 17.5
2395 Male, age 75, both hemispheres 16.5
Globus pallidus, internus
nTPM: 17.6
2566 Female, age 72, unknown 19.7
2111 Female, age 85, right hemisphere 18.8
1818 Male, age 74, unknown 18.2
2037 Male, age 80, right hemisphere 18.2
2778 Female, age 91, both hemispheres 17.7
2287 Male, age 75, right hemisphere 15.4
2483 Female, age 94, right hemisphere 15.1
Nucleus accumbens
nTPM: 16.3
2824 Male, age 61, right hemisphere 18.3
2732 Male, age 80, right hemisphere 18.0
1856 Female, age 91, right hemisphere 17.2
2391 Female, age 94, left hemisphere 16.7
2698 Female, age 72, unknown 15.6
1783 Male, age 74, unknown 15.5
1806 Female, age 85, left hemisphere 14.8
2286 Male, age 75, left hemisphere 14.2
Nucleus basalis of Meynert
nTPM: 17.4
2484 Female, age 94, left hemisphere 19.8
2569 Male, age 61, both hemispheres 17.6
2393 Male, age 80, right hemisphere 16.8
2821 Male, age 75, both hemispheres 15.6
Nucleus of the diagonal band
nTPM: 16.7
2029 Male, age 61, right hemisphere 19.5
1979 Male, age 74, unknown 17.4
1812 Female, age 91, both hemispheres 15.7
2775 Male, age 80, right hemisphere 15.4
2195 Female, age 85, both hemispheres 15.3
Olfactory tubercle
nTPM: 16.6
2856 Male, age 75, right hemisphere 17.8
1846 Male, age 80, right hemisphere 16.4
2487 Female, age 94, left hemisphere 16.3
1998 Female, age 91, both hemispheres 15.7
Putamen
nTPM: 17.0
2489 Female, age 72, unknown 19.0
2647 Male, age 75, left hemisphere 18.0
1829 Male, age 74, unknown 17.4
2482 Female, age 94, left hemisphere 17.2
1937 Female, age 91, right hemisphere 16.2
2466 Female, age 79, unknown 15.8
1838 Male, age 80, right hemisphere 15.4
Septal nuclei
nTPM: 16.6
2199 Male, age 80, right hemisphere 19.5
2394 Male, age 61, left hemisphere 17.6
2059 Female, age 85, both hemispheres 16.6
2009 Female, age 91, both hemispheres 16.3
1960 Male, age 74, unknown 15.7
2031 Female, age 72, unknown 15.3
2629 Female, age 94, right hemisphere 15.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.0
Samples: 246

Max nTPM: 38.6
Min nTPM: 8.3
Std nTPM: 4.6
Median nTPM: 18.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 38.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 38.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 34.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 29.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 29.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 29.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 28.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 27.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 27.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 27.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 27.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.3
Samples: 246

Max nTPM: 33.9
Min nTPM: 8.2
Std nTPM: 4.4
Median nTPM: 18.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 33.9
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 33.4
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 30.2
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 28.6
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 28.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 27.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 27.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 27.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 27.0
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 26.8
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 26.8
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Brain - Putamen (basal ganglia)
Average nTPM: 19.3
Samples: 205

Max nTPM: 32.8
Min nTPM: 7.2
Std nTPM: 4.2
Median nTPM: 18.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 32.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 29.7
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 29.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 29.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 28.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 27.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 27.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 26.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 26.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 26.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 26.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.8
FF:10164-103B2 76 years, female 8.8
Globus pallidus
Scaled Tags Per Million: 7.3
FF:10161-103A8 76 years, female 9.9
FF:10175-103C4 60 years, female 4.7
Nucleus accumbens
Scaled Tags Per Million: 11.0
FF:10037-101F1 23-56 years, mixed 11.0
Putamen
Scaled Tags Per Million: 13.7
FF:10176-103C5 60 years, female 13.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 12.6
Sample A Male 12.6
Sample B Male 14.6
Sample C Female 16.0
Sample D Female 15.5
Septum
nTPM: 16.3
Samples: 4

Max nTPM: 19.5
Min nTPM: 14.4
Sample A Male 14.6
Sample B Male 19.5
Sample C Female 16.8
Sample D Female 14.4
Ventral forebrain
nTPM: 16.4
Samples: 4

Max nTPM: 18.4
Min nTPM: 15.5
Sample A Male 15.9
Sample B Male 15.5
Sample C Female 18.4
Sample D Female 15.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71493753 Antisense, RP_050913_02_F04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
71493753 Antisense, RP_050913_02_F04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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