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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:124.0 nTPM
HPA:124.0 nTPM
GTEx:172.0 nTPM
FANTOM5:189.1 Scaled Tags Per Million
Pig:83.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 124.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 119.4
1981 Female, age 72, midline 136.1
2816 Male, age 47, midline 117.8
2194 Female, age 79, both hemispheres 117.7
2565 Male, age 75, midline 113.8
2048 Male, age 55, midline 111.7
Cervical spinal cord, dorsal horn
nTPM: 124.0
2296 Male, age 66, both hemispheres 154.0
2173 Female, age 72, unknown 146.5
2069 Male, age 47, both hemispheres 122.9
1877 Male, age 55, unknown 114.0
2297 Male, age 75, both hemispheres 105.0
2721 Male, age 90, both hemispheres 101.5
Cervical spinal cord, ventral horn
nTPM: 118.5
2098 Female, age 72, unknown 135.8
2068 Male, age 55, unknown 123.2
2809 Male, age 90, both hemispheres 118.8
2480 Male, age 75, both hemispheres 113.6
2820 Female, age 79, both hemispheres 111.0
2295 Male, age 66, both hemispheres 108.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 172.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 172.0
Samples: 159

Max nTPM: 288.7
Min nTPM: 80.6
Std nTPM: 44.9
Median nTPM: 168.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 288.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 278.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 270.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 258.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 257.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 255.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 251.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 250.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 248.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 246.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 243.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 241.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 241.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 237.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 237.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 235.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 233.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 233.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 231.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 230.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 229.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 227.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 225.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 223.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 220.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 219.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 217.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 216.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 216.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 215.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 214.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 213.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 213.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 211.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 210.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 209.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 207.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 206.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 205.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 205.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 205.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 203.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 201.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 198.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 195.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 194.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 193.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 192.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 192.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 192.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 191.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 190.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 190.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 190.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 190.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 189.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 189.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 188.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 187.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 186.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 185.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 185.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 184.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 182.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 180.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 179.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 178.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 177.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 177.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 177.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 176.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 176.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 174.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 172.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 172.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 172.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 171.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 169.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 169.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 168.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 167.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 166.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 165.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 165.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 165.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 164.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 164.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 164.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 164.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 163.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 162.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 162.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 162.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 161.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 161.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 161.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 161.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 160.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 159.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 159.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 155.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 150.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 150.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 149.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 149.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 148.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 147.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 146.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 143.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 143.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 143.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 142.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 141.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 141.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 141.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 140.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 140.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 139.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 139.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 139.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 138.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 137.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 137.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 137.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 135.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 134.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 133.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 132.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 130.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 129.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 129.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 125.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 124.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 123.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 122.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 121.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 121.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 120.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 120.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 117.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 117.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 115.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 115.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 113.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 113.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 109.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 108.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 105.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 102.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 100.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 99.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 97.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 96.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 95.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 95.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 95.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 88.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 86.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 80.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 189.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 189.1
FF:10181-103D1 60 years, female 222.9
FF:10159-103A6 76 years, female 155.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 83.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 79.7
Samples: 4

Max nTPM: 102.7
Min nTPM: 62.6
Sample A Female 62.6
Sample B Female 79.5
Sample C Male 102.7
Sample D Male 73.8
Ventral spinal cord
nTPM: 83.1
Samples: 4

Max nTPM: 87.9
Min nTPM: 70.4
Sample A Female 70.4
Sample B Female 86.6
Sample C Male 87.9
Sample D Male 87.6

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