BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:59.8 nTPM
HPA:59.8 nTPM
GTEx:55.6 nTPM
FANTOM5:54.8 Scaled Tags Per Million
Pig:83.6 nTPM
Mouse:128.3 nTPM
Allen mouse:2.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA014662
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 59.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.8
1781 Male, age 74, unknown 23.8
2289 Male, age 61, right hemisphere 11.0
2290 Female, age 72, unknown 8.0
1857 Female, age 85, left hemisphere 6.4
2846 Female, age 79, unknown 5.3
1854 Male, age 80, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 55.0
2284 Female, age 91, both hemispheres 77.9
2645 Female, age 72, unknown 77.5
2568 Male, age 61, both hemispheres 73.0
2491 Male, age 75, both hemispheres 66.1
2198 Male, age 80, both hemispheres 60.0
1956 Male, age 74, unknown 41.7
2292 Female, age 85, both hemispheres 40.6
2392 Female, age 94, both hemispheres 36.1
2196 Female, age 79, unknown 22.4
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 7.0
1783 Male, age 74, unknown 17.9
2824 Male, age 61, right hemisphere 15.7
1856 Female, age 91, right hemisphere 12.8
1806 Female, age 85, left hemisphere 9.2
2286 Male, age 75, left hemisphere 0.4
2698 Female, age 72, unknown 0.4
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.8
2484 Female, age 94, left hemisphere 3.2
2393 Male, age 80, right hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 54.2
2195 Female, age 85, both hemispheres 75.7
2775 Male, age 80, right hemisphere 73.0
2029 Male, age 61, right hemisphere 56.0
1812 Female, age 91, both hemispheres 53.9
1979 Male, age 74, unknown 12.3
Olfactory tubercle
nTPM: 59.8
1998 Female, age 91, both hemispheres 71.2
2487 Female, age 94, left hemisphere 70.2
2856 Male, age 75, right hemisphere 61.0
1846 Male, age 80, right hemisphere 36.8
Putamen
nTPM: 3.7
1937 Female, age 91, right hemisphere 6.7
1838 Male, age 80, right hemisphere 6.2
2466 Female, age 79, unknown 4.6
2647 Male, age 75, left hemisphere 4.5
1829 Male, age 74, unknown 3.9
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 44.8
1960 Male, age 74, unknown 95.4
2629 Female, age 94, right hemisphere 54.5
2031 Female, age 72, unknown 52.0
2059 Female, age 85, both hemispheres 49.8
2009 Female, age 91, both hemispheres 43.4
2394 Male, age 61, left hemisphere 15.8
2199 Male, age 80, right hemisphere 3.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 55.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.6
Samples: 246

Max nTPM: 105.7
Min nTPM: 10.7
Std nTPM: 16.3
Median nTPM: 40.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 105.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 97.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 82.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 80.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 76.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 75.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 74.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 72.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 71.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 71.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 70.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.6
Samples: 246

Max nTPM: 100.9
Min nTPM: 10.6
Std nTPM: 17.5
Median nTPM: 57.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 100.9
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 94.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 89.7
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 87.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 84.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 83.9
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 82.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 81.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 81.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 81.0
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 80.9
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Brain - Putamen (basal ganglia)
Average nTPM: 39.9
Samples: 205

Max nTPM: 99.5
Min nTPM: 11.1
Std nTPM: 15.3
Median nTPM: 38.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 99.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 83.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 80.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 74.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 71.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 71.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 70.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 67.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 66.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 66.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 65.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.0
FF:10164-103B2 76 years, female 32.0
Globus pallidus
Scaled Tags Per Million: 7.7
FF:10175-103C4 60 years, female 8.6
FF:10161-103A8 76 years, female 6.8
Nucleus accumbens
Scaled Tags Per Million: 54.8
FF:10037-101F1 23-56 years, mixed 54.8
Putamen
Scaled Tags Per Million: 37.5
FF:10176-103C5 60 years, female 37.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 83.6
Pig sample Sample description nTPM
Caudate
nTPM: 83.6
Samples: 4

Max nTPM: 102.2
Min nTPM: 62.6
Sample A Female 62.6
Sample B Female 90.8
Sample C Male 102.2
Sample D Male 78.8
Putamen
nTPM: 79.1
Samples: 4

Max nTPM: 96.5
Min nTPM: 50.0
Sample A Female 50.0
Sample B Female 74.5
Sample C Male 96.5
Sample D Male 95.4
Septum
nTPM: 57.7
Samples: 4

Max nTPM: 67.6
Min nTPM: 46.6
Sample A Female 67.6
Sample B Female 62.3
Sample C Male 46.6
Sample D Male 54.2
Ventral pallidum
nTPM: 67.3
Samples: 4

Max nTPM: 76.1
Min nTPM: 61.9
Sample A Female 68.7
Sample B Female 62.6
Sample C Male 76.1
Sample D Male 61.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 128.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 96.3
Samples: 4

Max nTPM: 105.9
Min nTPM: 85.2
Sample A Male 93.5
Sample B Male 85.2
Sample C Female 100.4
Sample D Female 105.9
Septum
nTPM: 128.3
Samples: 4

Max nTPM: 150.1
Min nTPM: 114.4
Sample A Male 150.1
Sample B Male 114.4
Sample C Female 125.8
Sample D Female 122.9
Ventral forebrain
nTPM: 126.4
Samples: 4

Max nTPM: 143.3
Min nTPM: 106.8
Sample A Male 143.3
Sample B Male 106.8
Sample C Female 121.0
Sample D Female 134.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
1640 Antisense, RP_040507_01_G11, Mouse strain C57BL/6J (56 days, male) 2.7
1639 Antisense, RP_040507_01_G11, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 1.6
1640 Antisense, RP_040507_01_G11, Mouse strain C57BL/6J (56 days, male) 1.6
1639 Antisense, RP_040507_01_G11, Mouse strain C57BL/6J (56 days, male) 0.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
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