MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA:13.0 nTPM
GTEx:255.3 nTPM
FANTOM5:223.1 Scaled Tags Per Million
Mouse:189.4 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
1833 Male, age 53, unknown 13.6
1870 Female, age 42, unknown 13.4
1827 Male, age 72, unknown 13.3
2411 Female, age 72, unknown 13.1
2019 Male, age 18, unknown 12.6
1830 Male, age 51, unknown 12.4
2219 Male, age 76, both hemispheres 11.5
2666 Male, age 74, left hemisphere 10.9
2828 Female, age 72, unknown 9.2
2586 Male, age 75, left hemisphere 7.9
Dorsal raphe nucleus
nTPM: 10.2
1828 Male, age 53, unknown 11.4
2750 Male, age 76, both hemispheres 10.9
2298 Female, age 72, unknown 9.8
2016 Female, age 72, unknown 9.6
2047 Male, age 72, unknown 9.2
Inferior colliculus
nTPM: 11.0
2097 Female, age 72, unknown 12.9
1890 Male, age 53, unknown 12.0
1848 Female, age 42, unknown 10.2
2849 Male, age 72, unknown 8.9
Median raphe nucleus
nTPM: 11.4
2220 Male, age 76, midline 11.4
Pedunculopontine tegmental nucleus
nTPM: 11.8
2334 Male, age 80, both hemispheres 12.7
1921 Female, age 85, both hemispheres 11.9
2338 Male, age 61, both hemispheres 10.7
Periaquaductal grey, anterior
nTPM: 11.1
1947 Male, age 18, unknown 11.8
2502 Female, age 75, unknown 10.9
1795 Male, age 51, unknown 10.5
Periaquaductal grey, dorsal
nTPM: 8.8
2464 Female, age 72, unknown 10.2
1831 Male, age 72, unknown 9.4
2850 Male, age 76, both hemispheres 8.0
1840 Male, age 53, unknown 7.7
Periaquaductal grey, lateral
nTPM: 8.4
2140 Male, age 76, both hemispheres 8.9
2053 Male, age 18, unknown 8.3
2272 Male, age 74, both hemispheres 8.1
Pretectal area
nTPM: 12.2
1944 Female, age 72, unknown 18.0
2007 Male, age 72, unknown 13.7
1817 Female, age 42, unknown 13.0
2316 Male, age 76, right hemisphere 12.5
1816 Male, age 51, unknown 12.1
1815 Male, age 53, unknown 11.9
2407 Male, age 75, both hemispheres 11.6
2224 Female, age 72, unknown 11.0
2273 Male, age 74, both hemispheres 10.9
2667 Female, age 75, unknown 10.2
2825 Male, age 18, unknown 8.8
Red nucleus
nTPM: 13.0
1821 Female, age 72, unknown 17.4
1904 Male, age 53, unknown 14.7
2227 Male, age 72, unknown 14.5
1865 Male, age 51, unknown 14.0
2823 Male, age 76, right hemisphere 13.5
2785 Male, age 18, unknown 13.1
2503 Female, age 72, unknown 12.7
2588 Male, age 74, left hemisphere 12.4
2769 Male, age 72, unknown 11.9
2584 Male, age 75, left hemisphere 11.5
1954 Female, age 42, unknown 10.6
2725 Female, age 75, unknown 9.8
Substantia nigra
nTPM: 10.8
1889 Female, age 72, unknown 13.8
2590 Female, age 75, unknown 13.6
1851 Male, age 51, unknown 11.9
2583 Male, age 75, right hemisphere 10.9
2241 Male, age 72, unknown 10.7
1941 Male, age 53, unknown 10.6
2665 Male, age 74, both hemispheres 10.2
1916 Female, age 42, unknown 9.5
2699 Male, age 18, unknown 9.4
2409 Female, age 72, unknown 7.0
Superior colliculus
nTPM: 12.4
2261 Male, age 18, unknown 16.0
2668 Female, age 75, unknown 14.8
1895 Male, age 76, right hemisphere 14.6
2087 Female, age 72, unknown 12.3
2664 Male, age 75, both hemispheres 11.8
1913 Female, age 42, unknown 11.6
2587 Male, age 74, left hemisphere 11.3
1995 Male, age 72, unknown 11.1
1839 Male, age 51, unknown 10.4
1796 Male, age 53, unknown 9.9
Ventral tegmental area
nTPM: 11.1
2218 Male, age 76, both hemispheres 12.0
1915 Female, age 42, unknown 11.9
2223 Female, age 72, unknown 11.8
2410 Female, age 72, unknown 10.9
1942 Male, age 51, unknown 10.7
2021 Male, age 53, unknown 9.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 255.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 255.3
Samples: 139

Max nTPM: 567.6
Min nTPM: 127.4
Std nTPM: 66.5
Median nTPM: 242.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 567.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 456.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 450.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 413.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 384.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 379.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 374.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 373.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 369.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 368.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 346.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 223.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 223.1
FF:10158-103A5 76 years, female 223.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 189.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 189.4
Samples: 4

Max nTPM: 198.9
Min nTPM: 180.1
Sample A Male 198.9
Sample B Male 189.3
Sample C Female 180.1
Sample D Female 189.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69838743 Antisense, RP_050321_03_G04, Mouse strain C57BL/6J (56 days, male) 1.6
73718052 Antisense, RP_051121_04_C06, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.