MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.7 nTPM
HPA:30.7 nTPM
GTEx:59.9 nTPM
FANTOM5:56.8 Scaled Tags Per Million
Mouse:11.5 nTPM
Allen mouse:19.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
2586 Male, age 75, left hemisphere 41.1
2666 Male, age 74, left hemisphere 32.5
2219 Male, age 76, both hemispheres 31.4
1833 Male, age 53, unknown 30.1
1827 Male, age 72, unknown 29.7
2019 Male, age 18, unknown 29.3
1830 Male, age 51, unknown 28.3
1870 Female, age 42, unknown 28.0
2828 Female, age 72, unknown 27.7
2411 Female, age 72, unknown 25.5
Dorsal raphe nucleus
nTPM: 28.9
1828 Male, age 53, unknown 31.3
2016 Female, age 72, unknown 30.8
2750 Male, age 76, both hemispheres 28.6
2298 Female, age 72, unknown 28.5
2047 Male, age 72, unknown 25.3
Inferior colliculus
nTPM: 28.6
2097 Female, age 72, unknown 30.4
1890 Male, age 53, unknown 29.1
1848 Female, age 42, unknown 27.4
2849 Male, age 72, unknown 27.4
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Pedunculopontine tegmental nucleus
nTPM: 27.5
2338 Male, age 61, both hemispheres 29.2
1921 Female, age 85, both hemispheres 27.1
2334 Male, age 80, both hemispheres 26.3
Periaquaductal grey, anterior
nTPM: 29.2
1795 Male, age 51, unknown 32.2
2502 Female, age 75, unknown 29.3
1947 Male, age 18, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 29.8
1831 Male, age 72, unknown 33.3
2850 Male, age 76, both hemispheres 30.6
2464 Female, age 72, unknown 28.9
1840 Male, age 53, unknown 26.4
Periaquaductal grey, lateral
nTPM: 28.9
2053 Male, age 18, unknown 29.9
2140 Male, age 76, both hemispheres 28.8
2272 Male, age 74, both hemispheres 28.1
Pretectal area
nTPM: 30.7
2007 Male, age 72, unknown 34.4
1817 Female, age 42, unknown 33.9
1816 Male, age 51, unknown 32.9
1815 Male, age 53, unknown 32.2
2407 Male, age 75, both hemispheres 30.6
2273 Male, age 74, both hemispheres 29.7
2667 Female, age 75, unknown 29.5
1944 Female, age 72, unknown 29.4
2224 Female, age 72, unknown 29.2
2316 Male, age 76, right hemisphere 28.4
2825 Male, age 18, unknown 27.7
Red nucleus
nTPM: 29.6
1904 Male, age 53, unknown 33.3
1821 Female, age 72, unknown 32.8
2584 Male, age 75, left hemisphere 30.5
1954 Female, age 42, unknown 30.4
2725 Female, age 75, unknown 30.0
2785 Male, age 18, unknown 30.0
1865 Male, age 51, unknown 29.5
2227 Male, age 72, unknown 29.0
2769 Male, age 72, unknown 28.7
2823 Male, age 76, right hemisphere 28.4
2503 Female, age 72, unknown 27.3
2588 Male, age 74, left hemisphere 25.7
Substantia nigra
nTPM: 28.1
2583 Male, age 75, right hemisphere 32.3
2699 Male, age 18, unknown 30.3
1889 Female, age 72, unknown 30.2
2590 Female, age 75, unknown 29.5
2665 Male, age 74, both hemispheres 28.6
1851 Male, age 51, unknown 27.0
2409 Female, age 72, unknown 26.9
1941 Male, age 53, unknown 26.3
1916 Female, age 42, unknown 25.1
2241 Male, age 72, unknown 24.5
Superior colliculus
nTPM: 30.0
1995 Male, age 72, unknown 36.2
2261 Male, age 18, unknown 33.0
1913 Female, age 42, unknown 31.4
2087 Female, age 72, unknown 30.4
2664 Male, age 75, both hemispheres 29.5
1796 Male, age 53, unknown 28.8
2668 Female, age 75, unknown 28.1
2587 Male, age 74, left hemisphere 27.7
1895 Male, age 76, right hemisphere 27.6
1839 Male, age 51, unknown 26.9
Ventral tegmental area
nTPM: 28.2
2223 Female, age 72, unknown 31.9
1942 Male, age 51, unknown 28.6
2218 Male, age 76, both hemispheres 27.5
1915 Female, age 42, unknown 27.3
2410 Female, age 72, unknown 27.3
2021 Male, age 53, unknown 26.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.9
Samples: 139

Max nTPM: 253.9
Min nTPM: 14.3
Std nTPM: 41.2
Median nTPM: 48.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 253.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 243.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 173.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 161.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 159.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 158.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 149.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 135.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 134.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 128.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 128.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.8
FF:10158-103A5 76 years, female 56.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.7
Sample A Male 11.9
Sample B Male 10.7
Sample C Female 11.2
Sample D Female 12.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.4
2334 Antisense, RP_040420_01_B07, Mouse strain C57BL/6J (56 days, male) 19.4
2333 Antisense, RP_040420_01_B07, Mouse strain C57BL/6J (56 days, male) 15.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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