BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.5 nTPM
HPA:18.5 nTPM
GTEx:13.8 nTPM
FANTOM5:25.0 Scaled Tags Per Million
Pig:42.1 nTPM
Mouse:83.4 nTPM
Allen mouse:7.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.3
1781 Male, age 74, unknown 2.8
2846 Female, age 79, unknown 0.2
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 8.5
2568 Male, age 61, both hemispheres 16.2
2198 Male, age 80, both hemispheres 14.1
2284 Female, age 91, both hemispheres 14.1
2645 Female, age 72, unknown 11.2
2491 Male, age 75, both hemispheres 8.5
1956 Male, age 74, unknown 7.6
2392 Female, age 94, both hemispheres 4.9
2196 Female, age 79, unknown 0.4
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 18.5
2029 Male, age 61, right hemisphere 26.4
2775 Male, age 80, right hemisphere 23.5
2195 Female, age 85, both hemispheres 21.9
1812 Female, age 91, both hemispheres 20.8
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 17.6
1998 Female, age 91, both hemispheres 21.8
2487 Female, age 94, left hemisphere 20.6
1846 Male, age 80, right hemisphere 18.5
2856 Male, age 75, right hemisphere 9.5
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 13.4
1960 Male, age 74, unknown 31.8
2031 Female, age 72, unknown 24.8
2629 Female, age 94, right hemisphere 17.0
2009 Female, age 91, both hemispheres 13.3
2059 Female, age 85, both hemispheres 7.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.8
Samples: 246

Max nTPM: 41.8
Min nTPM: 2.5
Std nTPM: 5.9
Median nTPM: 10.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 41.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 28.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 27.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 26.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 25.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 24.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 23.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 23.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 23.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 23.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 23.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 33.8
Min nTPM: 1.9
Std nTPM: 6.9
Median nTPM: 13.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 33.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 31.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 30.2
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 30.0
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 29.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 28.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 27.8
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 27.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 26.9
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 26.5
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 25.3
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Brain - Putamen (basal ganglia)
Average nTPM: 11.6
Samples: 205

Max nTPM: 26.6
Min nTPM: 2.8
Std nTPM: 4.9
Median nTPM: 10.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 26.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 23.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 23.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 23.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 21.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 21.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 20.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 20.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 20.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 20.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 19.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.0
FF:10164-103B2 76 years, female 11.0
Globus pallidus
Scaled Tags Per Million: 7.0
FF:10161-103A8 76 years, female 7.7
FF:10175-103C4 60 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 25.0
FF:10037-101F1 23-56 years, mixed 25.0
Putamen
Scaled Tags Per Million: 12.2
FF:10176-103C5 60 years, female 12.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.1
Pig sample Sample description nTPM
Caudate
nTPM: 42.1
Samples: 4

Max nTPM: 52.2
Min nTPM: 34.2
Sample A Female 34.2
Sample B Female 41.0
Sample C Male 52.2
Sample D Male 40.9
Putamen
nTPM: 34.4
Samples: 4

Max nTPM: 47.8
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 33.7
Sample C Male 47.8
Sample D Male 39.6
Septum
nTPM: 21.0
Samples: 4

Max nTPM: 30.6
Min nTPM: 11.1
Sample A Female 27.9
Sample B Female 30.6
Sample C Male 14.3
Sample D Male 11.1
Ventral pallidum
nTPM: 33.6
Samples: 4

Max nTPM: 45.3
Min nTPM: 24.5
Sample A Female 34.9
Sample B Female 45.3
Sample C Male 24.5
Sample D Male 29.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 83.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 72.4
Samples: 4

Max nTPM: 74.6
Min nTPM: 68.1
Sample A Male 74.6
Sample B Male 72.8
Sample C Female 74.2
Sample D Female 68.1
Septum
nTPM: 45.3
Samples: 4

Max nTPM: 52.1
Min nTPM: 35.2
Sample A Male 52.1
Sample B Male 45.2
Sample C Female 48.7
Sample D Female 35.2
Ventral forebrain
nTPM: 83.4
Samples: 4

Max nTPM: 90.8
Min nTPM: 74.8
Sample A Male 90.8
Sample B Male 74.8
Sample C Female 81.1
Sample D Female 86.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.1
70300756 Antisense, RP_050607_02_C09, Mouse strain C57BL/6J (56 days, male) 11.0
73931642 Antisense, RP_051214_04_B10, Mouse strain C57BL/6J (56 days, male) 3.2
Pallidum
Expression energy: 4.6
70300756 Antisense, RP_050607_02_C09, Mouse strain C57BL/6J (56 days, male) 7.9
73931642 Antisense, RP_051214_04_B10, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.