MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:57.4 nTPM
HPA:57.4 nTPM
GTEx:43.3 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:52.2 nTPM
Mouse:36.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.0
2666 Male, age 74, left hemisphere 56.5
2586 Male, age 75, left hemisphere 53.9
2219 Male, age 76, both hemispheres 52.6
2828 Female, age 72, unknown 52.6
1870 Female, age 42, unknown 50.6
2019 Male, age 18, unknown 50.1
1827 Male, age 72, unknown 49.9
1833 Male, age 53, unknown 48.8
1830 Male, age 51, unknown 48.3
2411 Female, age 72, unknown 47.2
Dorsal raphe nucleus
nTPM: 57.4
2047 Male, age 72, unknown 64.0
1828 Male, age 53, unknown 60.8
2298 Female, age 72, unknown 57.7
2016 Female, age 72, unknown 53.7
2750 Male, age 76, both hemispheres 50.7
Inferior colliculus
nTPM: 48.6
1890 Male, age 53, unknown 52.0
2097 Female, age 72, unknown 48.7
1848 Female, age 42, unknown 47.6
2849 Male, age 72, unknown 46.2
Median raphe nucleus
nTPM: 52.6
2220 Male, age 76, midline 52.6
Pedunculopontine tegmental nucleus
nTPM: 53.2
2334 Male, age 80, both hemispheres 54.3
2338 Male, age 61, both hemispheres 53.8
1921 Female, age 85, both hemispheres 51.4
Periaquaductal grey, anterior
nTPM: 52.6
1795 Male, age 51, unknown 54.8
1947 Male, age 18, unknown 53.6
2502 Female, age 75, unknown 49.4
Periaquaductal grey, dorsal
nTPM: 50.7
2850 Male, age 76, both hemispheres 56.4
1831 Male, age 72, unknown 50.7
2464 Female, age 72, unknown 48.4
1840 Male, age 53, unknown 47.2
Periaquaductal grey, lateral
nTPM: 51.7
2140 Male, age 76, both hemispheres 54.2
2053 Male, age 18, unknown 51.2
2272 Male, age 74, both hemispheres 49.7
Pretectal area
nTPM: 51.5
2007 Male, age 72, unknown 54.7
2224 Female, age 72, unknown 54.1
1816 Male, age 51, unknown 53.1
1817 Female, age 42, unknown 52.2
2316 Male, age 76, right hemisphere 51.8
1944 Female, age 72, unknown 51.3
2273 Male, age 74, both hemispheres 51.2
2407 Male, age 75, both hemispheres 50.2
2825 Male, age 18, unknown 50.0
1815 Male, age 53, unknown 49.7
2667 Female, age 75, unknown 48.5
Red nucleus
nTPM: 50.1
2725 Female, age 75, unknown 55.3
2584 Male, age 75, left hemisphere 52.3
2588 Male, age 74, left hemisphere 51.4
2785 Male, age 18, unknown 51.2
1821 Female, age 72, unknown 50.5
2227 Male, age 72, unknown 50.2
2823 Male, age 76, right hemisphere 49.6
1954 Female, age 42, unknown 49.3
2769 Male, age 72, unknown 48.6
1865 Male, age 51, unknown 48.0
1904 Male, age 53, unknown 47.2
2503 Female, age 72, unknown 47.0
Substantia nigra
nTPM: 52.8
1916 Female, age 42, unknown 59.1
2665 Male, age 74, both hemispheres 55.5
1851 Male, age 51, unknown 55.0
1941 Male, age 53, unknown 53.4
2583 Male, age 75, right hemisphere 52.8
2590 Female, age 75, unknown 51.9
2699 Male, age 18, unknown 51.4
1889 Female, age 72, unknown 50.5
2241 Male, age 72, unknown 50.0
2409 Female, age 72, unknown 48.5
Superior colliculus
nTPM: 51.6
2087 Female, age 72, unknown 56.2
2668 Female, age 75, unknown 53.5
2261 Male, age 18, unknown 53.1
1913 Female, age 42, unknown 51.6
1839 Male, age 51, unknown 51.2
2587 Male, age 74, left hemisphere 50.9
1995 Male, age 72, unknown 50.8
1796 Male, age 53, unknown 50.7
2664 Male, age 75, both hemispheres 50.7
1895 Male, age 76, right hemisphere 47.1
Ventral tegmental area
nTPM: 52.9
2021 Male, age 53, unknown 58.2
1915 Female, age 42, unknown 54.8
1942 Male, age 51, unknown 52.2
2218 Male, age 76, both hemispheres 51.7
2223 Female, age 72, unknown 51.0
2410 Female, age 72, unknown 49.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.3
Samples: 139

Max nTPM: 137.0
Min nTPM: 11.8
Std nTPM: 18.3
Median nTPM: 39.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 137.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 115.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 99.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 91.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 86.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 80.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 78.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 76.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 75.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 71.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 71.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.2
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 37.1
Min nTPM: 15.2
Sample A Female 37.1
Sample B Female 17.6
Sample C Male 19.3
Sample D Male 15.2
Periaqueductal gray
nTPM: 15.9
Samples: 3

Max nTPM: 18.4
Min nTPM: 14.7
Sample B Female 14.7
Sample C Male 18.4
Sample D Male 14.7
Substantia nigra
nTPM: 29.1
Samples: 4

Max nTPM: 46.4
Min nTPM: 19.6
Sample A Female 30.2
Sample B Female 46.4
Sample C Male 19.6
Sample D Male 20.1
Superior colliculi
nTPM: 52.2
Samples: 4

Max nTPM: 125.6
Min nTPM: 20.0
Sample A Female 42.6
Sample B Female 125.6
Sample C Male 20.0
Sample D Male 20.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.5
Samples: 4

Max nTPM: 40.5
Min nTPM: 33.1
Sample A Male 40.5
Sample B Male 35.4
Sample C Female 33.1
Sample D Female 36.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
74821967 Antisense, RP_060321_02_F05, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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