COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: High
Glandular cells: High
Peripheral nerve/ganglion: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:56.2 nTPM
HPA:16.5 nTPM
GTEx:56.2 nTPM
FANTOM5:105.9 Scaled Tags Per Million

COLON - Antibody stainingi
Antibody HPA007084Antibody HPA008903Antibody CAB016132
Endothelial cells HighMediumMedium
Glandular cells HighHighHigh
Peripheral nerve/ganglion -Medium-






COLON - HPA RNA-seqi
Average nTPM 16.5
overview
Male, age 54 		Colon sample 67
nTPM: 17.8
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57 		Colon sample 68
nTPM: 15.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80 		Colon sample 69
nTPM: 15.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68 		Colon sample 70
nTPM: 16.3
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68 		Colon sample 76
nTPM: 13.8
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61 		Colon sample 299
nTPM: 19
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80 		Colon sample 300
nTPM: 14.2
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78 		Colon sample 368
nTPM: 18.1
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84 		Colon sample 381
nTPM: 16.3
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80 		Colon sample 384
nTPM: 15.7
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78 		Colon sample 389
nTPM: 16.8
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69 		Colon sample 391
nTPM: 17.7
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72 		Colon sample 403
nTPM: 17.9
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Average nTPM 56.2
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 56.2
Samples: 373

Max nTPM: 99.1
Min nTPM: 26.4
Std nTPM: 12.1
Median nTPM: 54.8
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 99.1
GTEX-1LSNM-1426-SM-E6CIH 50-59 years, male 97.0
GTEX-1B8KE-1526-SM-7DUG2 50-59 years, male 94.1
GTEX-16MTA-1626-SM-6M47N 50-59 years, male 91.1
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 90.5
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 88.9
GTEX-1K9T9-2926-SM-E9TKD 50-59 years, female 87.1
GTEX-1OFPY-1226-SM-E76OM 60-69 years, male 85.9
GTEX-1L5NE-1926-SM-D3L9R 50-59 years, male 85.3
GTEX-15RIE-2026-SM-7KFRW 60-69 years, male 84.7
GTEX-1QP28-2226-SM-DTX8C 50-59 years, female 80.4
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Colon - Transverse
Average nTPM: 53.0
Samples: 406

Max nTPM: 89.6
Min nTPM: 31.7
Std nTPM: 9.1
Median nTPM: 52.6
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 89.6
GTEX-14PJ5-0926-SM-6LLIK 60-69 years, female 81.4
GTEX-1KANA-1926-SM-DHXKF 20-29 years, male 77.9
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 77.2
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 75.7
GTEX-1AX8Z-2726-SM-73KUC 60-69 years, male 73.9
GTEX-1CAMR-0926-SM-7MXTD 20-29 years, male 73.6
GTEX-15CHC-1626-SM-5ZZWS 60-69 years, female 72.1
GTEX-1LBAC-1626-SM-CXZKV 20-29 years, male 71.9
GTEX-ZF29-1726-SM-4WKFV 60-69 years, female 71.2
GTEX-1OKEX-1226-SM-DTXEC 60-69 years, male 71.2
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COLON - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 105.9
FF:10014-101C5 62,83,84 years, mixed 105.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.