MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.3 nTPM
HPA:37.3 nTPM
GTEx:38.1 nTPM
FANTOM5:22.7 Scaled Tags Per Million
Mouse:23.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.4
2586 Male, age 75, left hemisphere 37.5
1870 Female, age 42, unknown 37.2
2219 Male, age 76, both hemispheres 37.1
2019 Male, age 18, unknown 36.9
1833 Male, age 53, unknown 36.7
1827 Male, age 72, unknown 36.5
1830 Male, age 51, unknown 36.2
2666 Male, age 74, left hemisphere 35.4
2411 Female, age 72, unknown 35.3
2828 Female, age 72, unknown 34.9
Dorsal raphe nucleus
nTPM: 36.4
2298 Female, age 72, unknown 37.9
1828 Male, age 53, unknown 36.1
2750 Male, age 76, both hemispheres 36.1
2016 Female, age 72, unknown 36.0
2047 Male, age 72, unknown 35.9
Inferior colliculus
nTPM: 36.4
2097 Female, age 72, unknown 36.8
2849 Male, age 72, unknown 36.7
1890 Male, age 53, unknown 36.3
1848 Female, age 42, unknown 35.8
Median raphe nucleus
nTPM: 36.2
2220 Male, age 76, midline 36.2
Pedunculopontine tegmental nucleus
nTPM: 36.3
2338 Male, age 61, both hemispheres 36.8
1921 Female, age 85, both hemispheres 36.1
2334 Male, age 80, both hemispheres 36.0
Periaquaductal grey, anterior
nTPM: 35.6
2502 Female, age 75, unknown 36.1
1947 Male, age 18, unknown 35.4
1795 Male, age 51, unknown 35.2
Periaquaductal grey, dorsal
nTPM: 36.1
1831 Male, age 72, unknown 36.6
1840 Male, age 53, unknown 36.1
2850 Male, age 76, both hemispheres 36.0
2464 Female, age 72, unknown 35.5
Periaquaductal grey, lateral
nTPM: 36.0
2272 Male, age 74, both hemispheres 36.5
2053 Male, age 18, unknown 35.8
2140 Male, age 76, both hemispheres 35.6
Pretectal area
nTPM: 36.3
2667 Female, age 75, unknown 37.3
1815 Male, age 53, unknown 36.9
2273 Male, age 74, both hemispheres 36.8
1817 Female, age 42, unknown 36.6
2825 Male, age 18, unknown 36.4
1816 Male, age 51, unknown 36.3
2224 Female, age 72, unknown 36.2
1944 Female, age 72, unknown 36.0
2007 Male, age 72, unknown 35.9
2407 Male, age 75, both hemispheres 35.4
2316 Male, age 76, right hemisphere 35.3
Red nucleus
nTPM: 37.1
1821 Female, age 72, unknown 38.5
1865 Male, age 51, unknown 38.2
2769 Male, age 72, unknown 37.4
1904 Male, age 53, unknown 37.3
1954 Female, age 42, unknown 37.1
2503 Female, age 72, unknown 37.1
2227 Male, age 72, unknown 36.9
2584 Male, age 75, left hemisphere 36.8
2785 Male, age 18, unknown 36.8
2823 Male, age 76, right hemisphere 36.4
2588 Male, age 74, left hemisphere 36.1
2725 Female, age 75, unknown 36.1
Substantia nigra
nTPM: 37.3
2409 Female, age 72, unknown 39.5
2665 Male, age 74, both hemispheres 38.6
1851 Male, age 51, unknown 37.9
1889 Female, age 72, unknown 37.3
1916 Female, age 42, unknown 37.3
1941 Male, age 53, unknown 37.3
2699 Male, age 18, unknown 37.3
2583 Male, age 75, right hemisphere 37.1
2241 Male, age 72, unknown 35.8
2590 Female, age 75, unknown 35.1
Superior colliculus
nTPM: 36.5
2668 Female, age 75, unknown 38.1
1995 Male, age 72, unknown 37.6
1895 Male, age 76, right hemisphere 37.1
1913 Female, age 42, unknown 36.8
2261 Male, age 18, unknown 36.2
2587 Male, age 74, left hemisphere 36.1
2664 Male, age 75, both hemispheres 36.1
1796 Male, age 53, unknown 35.8
1839 Male, age 51, unknown 35.8
2087 Female, age 72, unknown 35.0
Ventral tegmental area
nTPM: 36.2
1915 Female, age 42, unknown 37.3
2223 Female, age 72, unknown 36.4
2218 Male, age 76, both hemispheres 36.0
2410 Female, age 72, unknown 35.9
2021 Male, age 53, unknown 35.8
1942 Male, age 51, unknown 35.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.1
Samples: 139

Max nTPM: 72.9
Min nTPM: 19.7
Std nTPM: 8.6
Median nTPM: 37.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 72.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 60.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 60.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 55.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 54.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 52.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 52.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 51.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 51.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 50.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.7
FF:10158-103A5 76 years, female 22.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 24.2
Min nTPM: 22.8
Sample A Male 23.7
Sample B Male 24.2
Sample C Female 22.8
Sample D Female 23.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
632512 Antisense, RP_040907_01_G01, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.