BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.7 nTPM
HPA:37.7 nTPM
GTEx:29.8 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Mouse:30.4 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA008507
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.5
2288 Male, age 75, left hemisphere 36.7
2846 Female, age 79, unknown 36.2
1857 Female, age 85, left hemisphere 35.7
1854 Male, age 80, left hemisphere 35.6
1781 Male, age 74, unknown 35.4
2290 Female, age 72, unknown 35.4
2481 Female, age 94, left hemisphere 35.0
2289 Male, age 61, right hemisphere 34.3
Claustrum
nTPM: 35.8
2568 Male, age 61, both hemispheres 36.8
2491 Male, age 75, both hemispheres 36.4
1956 Male, age 74, unknown 36.3
2196 Female, age 79, unknown 36.1
2198 Male, age 80, both hemispheres 36.1
2284 Female, age 91, both hemispheres 35.6
2292 Female, age 85, both hemispheres 35.1
2392 Female, age 94, both hemispheres 35.0
2645 Female, age 72, unknown 34.9
Globus pallidus, externus
nTPM: 37.1
2772 Female, age 79, unknown 38.7
1996 Male, age 80, right hemisphere 37.7
2395 Male, age 75, both hemispheres 36.7
2567 Female, age 72, unknown 36.5
2646 Male, age 61, right hemisphere 35.8
Globus pallidus, internus
nTPM: 37.7
2287 Male, age 75, right hemisphere 39.1
1818 Male, age 74, unknown 38.3
2778 Female, age 91, both hemispheres 38.3
2111 Female, age 85, right hemisphere 37.6
2037 Male, age 80, right hemisphere 37.4
2566 Female, age 72, unknown 37.0
2483 Female, age 94, right hemisphere 35.9
Nucleus accumbens
nTPM: 35.7
2286 Male, age 75, left hemisphere 37.0
1856 Female, age 91, right hemisphere 36.8
2698 Female, age 72, unknown 35.7
2824 Male, age 61, right hemisphere 35.7
1783 Male, age 74, unknown 35.3
2732 Male, age 80, right hemisphere 35.2
2391 Female, age 94, left hemisphere 35.0
1806 Female, age 85, left hemisphere 34.7
Nucleus basalis of Meynert
nTPM: 35.5
2821 Male, age 75, both hemispheres 36.9
2569 Male, age 61, both hemispheres 35.5
2393 Male, age 80, right hemisphere 34.9
2484 Female, age 94, left hemisphere 34.6
Nucleus of the diagonal band
nTPM: 36.2
2029 Male, age 61, right hemisphere 37.5
1812 Female, age 91, both hemispheres 36.5
2775 Male, age 80, right hemisphere 36.5
1979 Male, age 74, unknown 35.3
2195 Female, age 85, both hemispheres 35.0
Olfactory tubercle
nTPM: 36.3
1846 Male, age 80, right hemisphere 37.7
1998 Female, age 91, both hemispheres 36.2
2856 Male, age 75, right hemisphere 35.7
2487 Female, age 94, left hemisphere 35.6
Putamen
nTPM: 35.4
2482 Female, age 94, left hemisphere 36.4
1937 Female, age 91, right hemisphere 35.7
2647 Male, age 75, left hemisphere 35.7
1829 Male, age 74, unknown 35.3
1838 Male, age 80, right hemisphere 35.0
2466 Female, age 79, unknown 35.0
2489 Female, age 72, unknown 34.7
Septal nuclei
nTPM: 35.5
2629 Female, age 94, right hemisphere 37.2
2009 Female, age 91, both hemispheres 36.0
2031 Female, age 72, unknown 36.0
1960 Male, age 74, unknown 35.4
2059 Female, age 85, both hemispheres 35.3
2199 Male, age 80, right hemisphere 34.7
2394 Male, age 61, left hemisphere 33.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.8
Samples: 246

Max nTPM: 58.2
Min nTPM: 17.0
Std nTPM: 6.3
Median nTPM: 26.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 58.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 54.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 52.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 50.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 45.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 44.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 43.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 43.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 43.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 43.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 41.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.6
Samples: 246

Max nTPM: 65.2
Min nTPM: 15.4
Std nTPM: 7.0
Median nTPM: 27.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 65.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 54.4
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 50.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 47.8
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 46.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 45.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 45.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 44.6
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 43.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 43.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 41.9
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Brain - Putamen (basal ganglia)
Average nTPM: 29.8
Samples: 205

Max nTPM: 67.9
Min nTPM: 16.1
Std nTPM: 6.8
Median nTPM: 29.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 67.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 54.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 46.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 46.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 45.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 45.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 44.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 41.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 41.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 41.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 41.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.5
FF:10164-103B2 76 years, female 23.5
Globus pallidus
Scaled Tags Per Million: 24.0
FF:10161-103A8 76 years, female 25.1
FF:10175-103C4 60 years, female 22.8
Nucleus accumbens
Scaled Tags Per Million: 22.3
FF:10037-101F1 23-56 years, mixed 22.3
Putamen
Scaled Tags Per Million: 20.4
FF:10176-103C5 60 years, female 20.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 26.4
Samples: 4

Max nTPM: 30.1
Min nTPM: 24.2
Sample A Male 24.2
Sample B Male 30.1
Sample C Female 25.8
Sample D Female 25.4
Septum
nTPM: 27.8
Samples: 4

Max nTPM: 31.8
Min nTPM: 26.1
Sample A Male 26.6
Sample B Male 31.8
Sample C Female 26.5
Sample D Female 26.1
Ventral forebrain
nTPM: 30.4
Samples: 4

Max nTPM: 35.4
Min nTPM: 28.6
Sample A Male 28.6
Sample B Male 28.8
Sample C Female 35.4
Sample D Female 28.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
632512 Antisense, RP_040907_01_G01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
632512 Antisense, RP_040907_01_G01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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