MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.2 nTPM
HPA:43.2 nTPM
GTEx:45.3 nTPM
FANTOM5:73.9 Scaled Tags Per Million
Mouse:62.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.0
1870 Female, age 42, unknown 43.8
2411 Female, age 72, unknown 42.3
1830 Male, age 51, unknown 42.0
2586 Male, age 75, left hemisphere 41.7
1827 Male, age 72, unknown 41.0
2019 Male, age 18, unknown 40.8
1833 Male, age 53, unknown 40.1
2828 Female, age 72, unknown 40.1
2666 Male, age 74, left hemisphere 39.7
2219 Male, age 76, both hemispheres 38.1
Dorsal raphe nucleus
nTPM: 41.9
2298 Female, age 72, unknown 44.3
2750 Male, age 76, both hemispheres 42.5
2016 Female, age 72, unknown 41.6
2047 Male, age 72, unknown 41.2
1828 Male, age 53, unknown 40.1
Inferior colliculus
nTPM: 39.7
1890 Male, age 53, unknown 40.2
1848 Female, age 42, unknown 40.1
2849 Male, age 72, unknown 39.4
2097 Female, age 72, unknown 39.0
Median raphe nucleus
nTPM: 42.3
2220 Male, age 76, midline 42.3
Pedunculopontine tegmental nucleus
nTPM: 43.2
2338 Male, age 61, both hemispheres 47.4
2334 Male, age 80, both hemispheres 42.5
1921 Female, age 85, both hemispheres 39.9
Periaquaductal grey, anterior
nTPM: 41.0
2502 Female, age 75, unknown 42.1
1947 Male, age 18, unknown 40.5
1795 Male, age 51, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 39.8
2850 Male, age 76, both hemispheres 41.1
1840 Male, age 53, unknown 40.7
2464 Female, age 72, unknown 39.4
1831 Male, age 72, unknown 38.0
Periaquaductal grey, lateral
nTPM: 41.4
2272 Male, age 74, both hemispheres 42.9
2140 Male, age 76, both hemispheres 41.0
2053 Male, age 18, unknown 40.4
Pretectal area
nTPM: 40.9
2273 Male, age 74, both hemispheres 43.0
2825 Male, age 18, unknown 41.7
2224 Female, age 72, unknown 41.5
2007 Male, age 72, unknown 41.2
1817 Female, age 42, unknown 41.0
1815 Male, age 53, unknown 40.9
2667 Female, age 75, unknown 40.9
1944 Female, age 72, unknown 40.1
2316 Male, age 76, right hemisphere 40.0
1816 Male, age 51, unknown 39.8
2407 Male, age 75, both hemispheres 39.5
Red nucleus
nTPM: 41.1
1865 Male, age 51, unknown 42.4
1821 Female, age 72, unknown 42.1
1954 Female, age 42, unknown 41.8
1904 Male, age 53, unknown 41.7
2503 Female, age 72, unknown 41.7
2227 Male, age 72, unknown 41.6
2785 Male, age 18, unknown 41.4
2725 Female, age 75, unknown 40.8
2823 Male, age 76, right hemisphere 40.8
2769 Male, age 72, unknown 40.6
2584 Male, age 75, left hemisphere 40.3
2588 Male, age 74, left hemisphere 38.2
Substantia nigra
nTPM: 41.6
2590 Female, age 75, unknown 43.2
1851 Male, age 51, unknown 43.1
2241 Male, age 72, unknown 42.6
1916 Female, age 42, unknown 42.5
2665 Male, age 74, both hemispheres 41.2
1889 Female, age 72, unknown 41.1
1941 Male, age 53, unknown 41.1
2699 Male, age 18, unknown 41.0
2409 Female, age 72, unknown 40.5
2583 Male, age 75, right hemisphere 39.6
Superior colliculus
nTPM: 40.7
1913 Female, age 42, unknown 42.5
1995 Male, age 72, unknown 42.1
2587 Male, age 74, left hemisphere 42.1
2261 Male, age 18, unknown 41.5
1796 Male, age 53, unknown 41.3
2664 Male, age 75, both hemispheres 40.9
1839 Male, age 51, unknown 40.1
1895 Male, age 76, right hemisphere 39.0
2087 Female, age 72, unknown 38.9
2668 Female, age 75, unknown 38.5
Ventral tegmental area
nTPM: 41.9
2410 Female, age 72, unknown 43.8
2223 Female, age 72, unknown 43.0
2021 Male, age 53, unknown 42.1
1915 Female, age 42, unknown 41.3
2218 Male, age 76, both hemispheres 41.0
1942 Male, age 51, unknown 40.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.3
Samples: 139

Max nTPM: 115.5
Min nTPM: 30.3
Std nTPM: 12.9
Median nTPM: 41.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 115.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 97.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 81.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 80.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 74.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 73.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 72.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 68.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 65.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 63.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.9
FF:10158-103A5 76 years, female 73.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.5
Samples: 4

Max nTPM: 66.5
Min nTPM: 60.7
Sample A Male 61.6
Sample B Male 60.7
Sample C Female 61.3
Sample D Female 66.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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