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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:45.1 nTPM
HPA:45.1 nTPM
GTEx:58.4 nTPM
FANTOM5:74.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 43.9
1981 Female, age 72, midline 47.4
2565 Male, age 75, midline 47.1
2816 Male, age 47, midline 42.8
2048 Male, age 55, midline 41.7
2194 Female, age 79, both hemispheres 40.3
Cervical spinal cord, dorsal horn
nTPM: 45.1
2296 Male, age 66, both hemispheres 53.5
2173 Female, age 72, unknown 49.5
2069 Male, age 47, both hemispheres 47.4
1877 Male, age 55, unknown 43.1
2721 Male, age 90, both hemispheres 39.1
2297 Male, age 75, both hemispheres 37.7
Cervical spinal cord, ventral horn
nTPM: 44.5
2098 Female, age 72, unknown 51.3
2809 Male, age 90, both hemispheres 46.6
2480 Male, age 75, both hemispheres 45.3
2068 Male, age 55, unknown 42.5
2295 Male, age 66, both hemispheres 41.7
2820 Female, age 79, both hemispheres 39.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 58.4
Samples: 159

Max nTPM: 92.4
Min nTPM: 34.0
Std nTPM: 10.5
Median nTPM: 58.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 92.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 82.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 82.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 82.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 82.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 81.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 80.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 80.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 80.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 77.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 77.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 72.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 72.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 71.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 71.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 71.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 71.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 70.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 69.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 69.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 68.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 68.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 67.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 67.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 67.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 67.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 67.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 67.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 67.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 66.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 66.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 66.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 65.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 65.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 65.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 65.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 65.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 65.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 65.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 64.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 64.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 64.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 64.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 64.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 63.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 63.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 63.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 63.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 63.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 63.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 62.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 62.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 62.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 62.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 62.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 62.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 62.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 62.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 61.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 61.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 61.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 61.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 61.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 61.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 60.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 60.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 60.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 60.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 60.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 60.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 60.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 60.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 59.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 59.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 59.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 59.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 58.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 58.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 58.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 58.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 58.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 58.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 58.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 57.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 57.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 57.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 57.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 57.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 57.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 56.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 56.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 56.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 56.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 56.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 56.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 55.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 55.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 55.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 55.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 54.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 54.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 54.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 54.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 54.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 54.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 54.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 54.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 54.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 53.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 53.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 53.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 53.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 52.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 52.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 52.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 52.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 52.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 51.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 51.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 51.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 51.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 51.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 50.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 50.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 50.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 49.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 49.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 49.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 49.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 48.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 48.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 48.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 47.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 47.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 47.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 47.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 47.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 46.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 45.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 45.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 45.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 45.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 45.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 44.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 44.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 43.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 42.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 42.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 42.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 42.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 41.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 40.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 40.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 40.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 39.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 38.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 38.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 36.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 34.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 74.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 74.6
FF:10181-103D1 60 years, female 79.8
FF:10159-103A6 76 years, female 69.4

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