MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:99.8 nTPM
HPA:99.8 nTPM
GTEx:105.0 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Mouse:22.5 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.5
2019 Male, age 18, unknown 105.4
2411 Female, age 72, unknown 102.8
1827 Male, age 72, unknown 99.3
1870 Female, age 42, unknown 97.4
2828 Female, age 72, unknown 93.3
2586 Male, age 75, left hemisphere 92.0
2219 Male, age 76, both hemispheres 91.4
1830 Male, age 51, unknown 91.2
1833 Male, age 53, unknown 91.2
2666 Male, age 74, left hemisphere 91.0
Dorsal raphe nucleus
nTPM: 97.3
2047 Male, age 72, unknown 101.0
2298 Female, age 72, unknown 98.9
2750 Male, age 76, both hemispheres 97.7
1828 Male, age 53, unknown 97.3
2016 Female, age 72, unknown 91.7
Inferior colliculus
nTPM: 96.2
2097 Female, age 72, unknown 100.8
1890 Male, age 53, unknown 100.1
1848 Female, age 42, unknown 95.0
2849 Male, age 72, unknown 88.8
Median raphe nucleus
nTPM: 97.6
2220 Male, age 76, midline 97.6
Pedunculopontine tegmental nucleus
nTPM: 96.1
1921 Female, age 85, both hemispheres 97.8
2334 Male, age 80, both hemispheres 97.3
2338 Male, age 61, both hemispheres 93.3
Periaquaductal grey, anterior
nTPM: 96.6
1795 Male, age 51, unknown 97.6
1947 Male, age 18, unknown 96.3
2502 Female, age 75, unknown 95.9
Periaquaductal grey, dorsal
nTPM: 92.2
1831 Male, age 72, unknown 93.3
2850 Male, age 76, both hemispheres 92.7
1840 Male, age 53, unknown 92.4
2464 Female, age 72, unknown 90.5
Periaquaductal grey, lateral
nTPM: 94.1
2053 Male, age 18, unknown 95.6
2272 Male, age 74, both hemispheres 94.4
2140 Male, age 76, both hemispheres 92.2
Pretectal area
nTPM: 98.9
2007 Male, age 72, unknown 106.3
1816 Male, age 51, unknown 105.8
1944 Female, age 72, unknown 103.6
1817 Female, age 42, unknown 101.3
2667 Female, age 75, unknown 99.5
1815 Male, age 53, unknown 98.2
2316 Male, age 76, right hemisphere 97.1
2224 Female, age 72, unknown 95.4
2273 Male, age 74, both hemispheres 95.2
2407 Male, age 75, both hemispheres 94.4
2825 Male, age 18, unknown 91.2
Red nucleus
nTPM: 99.8
1821 Female, age 72, unknown 109.0
2785 Male, age 18, unknown 100.7
2725 Female, age 75, unknown 100.5
1954 Female, age 42, unknown 100.3
2503 Female, age 72, unknown 100.1
1865 Male, age 51, unknown 99.6
2588 Male, age 74, left hemisphere 99.3
1904 Male, age 53, unknown 99.2
2823 Male, age 76, right hemisphere 98.0
2769 Male, age 72, unknown 97.3
2227 Male, age 72, unknown 97.2
2584 Male, age 75, left hemisphere 96.1
Substantia nigra
nTPM: 98.5
1916 Female, age 42, unknown 105.2
1851 Male, age 51, unknown 102.7
1889 Female, age 72, unknown 102.5
1941 Male, age 53, unknown 101.6
2409 Female, age 72, unknown 101.2
2241 Male, age 72, unknown 98.0
2590 Female, age 75, unknown 96.1
2699 Male, age 18, unknown 93.9
2665 Male, age 74, both hemispheres 93.4
2583 Male, age 75, right hemisphere 90.7
Superior colliculus
nTPM: 96.3
2587 Male, age 74, left hemisphere 100.4
2087 Female, age 72, unknown 100.3
1796 Male, age 53, unknown 98.8
2668 Female, age 75, unknown 97.3
1895 Male, age 76, right hemisphere 97.1
2261 Male, age 18, unknown 96.7
1913 Female, age 42, unknown 93.7
1995 Male, age 72, unknown 93.6
2664 Male, age 75, both hemispheres 93.3
1839 Male, age 51, unknown 91.5
Ventral tegmental area
nTPM: 98.1
1915 Female, age 42, unknown 101.0
2223 Female, age 72, unknown 101.0
2410 Female, age 72, unknown 101.0
2218 Male, age 76, both hemispheres 96.5
1942 Male, age 51, unknown 96.3
2021 Male, age 53, unknown 93.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 105.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.0
Samples: 139

Max nTPM: 218.0
Min nTPM: 47.6
Std nTPM: 27.3
Median nTPM: 99.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 218.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 187.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 169.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 167.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 164.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 161.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 160.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 158.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 158.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 155.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 155.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.2
FF:10158-103A5 76 years, female 64.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 27.2
Min nTPM: 19.3
Sample A Male 27.2
Sample B Male 21.1
Sample C Female 19.3
Sample D Female 22.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
69202388 Antisense, RP_050324_03_E11, Mouse strain C57BL/6J (56 days, male) 4.6

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