MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA:21.3 nTPM
GTEx:149.5 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:94.3 nTPM
Mouse:48.2 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.5
2219 Male, age 76, both hemispheres 35.2
1827 Male, age 72, unknown 0.0
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2019 Male, age 18, unknown 0.0
2411 Female, age 72, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2666 Male, age 74, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.0
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.0
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 0.0
1921 Female, age 85, both hemispheres 0.0
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 0.0
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 3.8
1840 Male, age 53, unknown 15.5
1831 Male, age 72, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 0.0
1815 Male, age 53, unknown 0.0
1816 Male, age 51, unknown 0.0
1817 Female, age 42, unknown 0.0
1944 Female, age 72, unknown 0.0
2007 Male, age 72, unknown 0.0
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2667 Female, age 75, unknown 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 0.0
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 21.3
2699 Male, age 18, unknown 129.9
2665 Male, age 74, both hemispheres 45.7
1851 Male, age 51, unknown 38.0
1889 Female, age 72, unknown 0.0
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 0.0
1796 Male, age 53, unknown 0.0
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2087 Female, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 6.3
1915 Female, age 42, unknown 27.7
2223 Female, age 72, unknown 10.3
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2218 Male, age 76, both hemispheres 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 149.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 149.5
Samples: 139

Max nTPM: 828.3
Min nTPM: 7.7
Std nTPM: 160.8
Median nTPM: 95.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 828.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 791.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 763.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 760.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 640.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 628.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 556.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 531.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 444.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 393.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 371.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.5
FF:10158-103A5 76 years, female 32.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 94.3
Pig sample Sample description nTPM
Midbrain
nTPM: 57.1
Samples: 4

Max nTPM: 70.3
Min nTPM: 31.9
Sample A Female 60.9
Sample B Female 65.1
Sample C Male 31.9
Sample D Male 70.3
Periaqueductal gray
nTPM: 94.3
Samples: 3

Max nTPM: 127.2
Min nTPM: 61.7
Sample B Female 61.7
Sample C Male 127.2
Sample D Male 94.0
Substantia nigra
nTPM: 63.8
Samples: 4

Max nTPM: 81.6
Min nTPM: 41.7
Sample A Female 81.6
Sample B Female 51.6
Sample C Male 80.2
Sample D Male 41.7
Superior colliculi
nTPM: 37.7
Samples: 4

Max nTPM: 78.9
Min nTPM: 15.7
Sample A Female 78.9
Sample B Female 15.7
Sample C Male 21.5
Sample D Male 34.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.2
Samples: 4

Max nTPM: 54.3
Min nTPM: 44.4
Sample A Male 54.3
Sample B Male 44.9
Sample C Female 44.4
Sample D Female 49.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
74586669 Antisense, RP_051214_01_B09, Mouse strain C57BL/6J (56 days, male) 5.0
69015811 Antisense, RP_050315_01_G04, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.