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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:176.3 nTPM
HPA:176.3 nTPM
GTEx:416.5 nTPM
FANTOM5:312.0 Scaled Tags Per Million
Pig:326.0 nTPM
Mouse:601.5 nTPM
Allen mouse:25.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 176.3
Sample id Sample description nTPM
Amygdala
nTPM: 45.0
2517 Female, age 94, left hemisphere 124.2
1987 Female, age 91, left hemisphere 58.2
2514 Male, age 75, right hemisphere 42.7
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 176.3
2243 Female, age 91, right hemisphere 290.1
2685 Female, age 94, left hemisphere 240.7
2827 Female, age 67, right hemisphere 204.7
2110 Male, age 80, left hemisphere 154.1
2609 Male, age 75, right hemisphere 143.1
1955 Male, age 76, both hemispheres 25.0
Central amygdala
nTPM: 93.9
2826 Female, age 94, left hemisphere 234.3
2239 Male, age 80, left hemisphere 135.2
2701 Female, age 91, right hemisphere 66.2
2515 Male, age 75, right hemisphere 34.1
1905 Male, age 76, both hemispheres 0.0
Corticomedial amygdala
nTPM: 164.5
2242 Female, age 91, right hemisphere 354.9
2829 Male, age 80, left hemisphere 239.8
2535 Female, age 67, right hemisphere 217.8
2428 Male, age 75, right hemisphere 86.7
2429 Female, age 94, left hemisphere 70.4
2240 Male, age 76, both hemispheres 17.1
Lateral amygdala
nTPM: 98.8
2534 Female, age 94, left hemisphere 220.8
2255 Female, age 91, right hemisphere 151.0
2256 Male, age 80, left hemisphere 134.4
2830 Female, age 67, right hemisphere 65.2
2516 Male, age 75, right hemisphere 21.2
1883 Male, age 76, both hemispheres 0.0
Stria terminalis, bed nucleus
nTPM: 84.5
2486 Female, age 94, both hemispheres 118.7
1974 Female, age 91, both hemispheres 116.0
2201 Male, age 74, unknown 18.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 416.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 416.5
Samples: 152

Max nTPM: 1357.4
Min nTPM: 21.5
Std nTPM: 213.5
Median nTPM: 381.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1357.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1347.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1193.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1003.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 981.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 858.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 845.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 742.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 734.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 699.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 692.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 690.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 676.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 660.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 651.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 647.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 636.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 631.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 622.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 611.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 598.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 597.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 591.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 576.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 576.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 570.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 565.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 564.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 560.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 558.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 550.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 541.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 539.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 538.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 535.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 535.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 531.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 528.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 518.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 509.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 507.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 504.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 484.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 474.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 474.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 469.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 460.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 456.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 456.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 453.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 449.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 448.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 447.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 443.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 441.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 437.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 434.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 431.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 431.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 421.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 419.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 414.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 413.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 413.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 411.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 411.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 406.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 402.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 397.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 397.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 396.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 395.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 392.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 392.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 382.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 382.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 381.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 379.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 379.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 377.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 375.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 375.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 370.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 369.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 369.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 368.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 363.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 362.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 361.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 360.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 351.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 349.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 346.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 345.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 342.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 340.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 335.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 334.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 334.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 332.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 325.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 322.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 319.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 319.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 317.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 317.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 308.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 305.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 302.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 294.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 293.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 284.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 281.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 278.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 276.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 274.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 274.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 269.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 260.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 258.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 257.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 257.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 253.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 252.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 249.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 246.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 243.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 240.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 236.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 236.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 230.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 229.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 217.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 216.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 207.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 198.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 182.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 182.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 176.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 165.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 162.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 153.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 146.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 137.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 135.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 131.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 126.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 120.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 120.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 92.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 62.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 21.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 312.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 312.0
FF:10151-102I7 76 years, female 312.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 326.0
Pig sample Sample description nTPM
Amygdala
nTPM: 326.0
Samples: 4

Max nTPM: 454.1
Min nTPM: 211.2
Sample A Female 454.1
Sample B Female 211.2
Sample C Male 337.0
Sample D Male 301.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 601.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 601.5
Samples: 4

Max nTPM: 647.8
Min nTPM: 558.6
Sample A Male 558.6
Sample B Male 607.6
Sample C Female 647.8
Sample D Female 592.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 25.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.2
74586669 Antisense, RP_051214_01_B09, Mouse strain C57BL/6J (56 days, male) 26.1
69015811 Antisense, RP_050315_01_G04, Mouse strain C57BL/6J (56 days, male) 24.2

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