We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GRINA
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • GRINA
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:224.1 nTPM
FANTOM5:512.5 Scaled Tags Per Million
Pig:217.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA036980Antibody HPA036981
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 224.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 224.1
Samples: 246

Max nTPM: 392.1
Min nTPM: 125.4
Std nTPM: 44.7
Median nTPM: 223.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 392.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 336.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 325.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 321.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 321.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 315.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 306.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 304.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 301.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 298.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 295.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 295.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 295.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 293.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 293.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 293.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 291.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 290.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 285.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 284.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 283.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 282.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 282.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 281.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 281.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 280.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 278.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 278.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 278.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 277.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 277.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 277.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 277.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 275.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 274.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 273.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 273.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 270.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 270.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 269.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 266.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 264.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 264.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 263.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 263.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 263.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 262.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 261.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 261.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 261.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 261.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 260.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 260.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 260.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 259.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 259.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 259.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 258.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 258.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 258.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 257.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 255.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 253.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 253.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 253.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 253.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 253.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 253.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 251.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 250.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 250.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 250.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 249.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 248.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 248.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 247.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 247.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 246.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 246.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 246.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 245.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 245.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 245.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 245.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 244.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 243.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 242.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 242.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 242.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 241.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 241.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 241.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 239.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 238.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 238.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 237.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 237.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 236.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 235.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 235.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 235.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 235.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 235.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 234.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 233.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 232.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 232.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 232.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 231.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 231.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 230.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 228.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 228.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 228.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 227.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 225.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 225.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 225.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 225.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 224.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 224.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 224.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 224.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 223.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 223.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 222.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 222.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 221.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 220.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 220.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 220.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 220.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 219.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 219.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 219.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 218.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 215.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 215.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 215.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 215.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 215.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 214.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 214.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 212.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 212.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 211.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 209.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 209.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 208.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 207.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 207.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 207.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 207.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 206.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 206.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 205.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 205.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 204.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 204.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 203.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 203.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 203.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 202.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 202.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 202.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 201.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 201.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 200.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 200.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 200.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 198.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 198.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 198.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 197.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 197.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 197.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 197.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 196.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 195.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 195.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 194.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 194.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 194.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 192.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 191.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 191.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 191.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 190.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 190.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 190.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 189.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 188.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 188.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 188.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 188.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 188.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 186.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 186.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 186.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 186.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 185.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 185.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 185.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 185.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 184.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 183.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 182.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 181.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 179.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 177.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 175.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 175.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 174.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 173.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 173.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 173.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 172.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 169.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 168.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 168.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 167.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 166.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 164.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 164.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 162.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 158.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 158.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 156.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 156.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 152.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 151.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 151.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 147.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 146.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 146.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 143.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 143.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 143.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 143.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 141.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 137.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 134.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 131.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 130.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 129.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 125.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 512.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 512.5
FF:10164-103B2 76 years, female 512.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 217.9
Pig sample Sample description nTPM
Caudate
nTPM: 217.9
Samples: 4

Max nTPM: 295.2
Min nTPM: 160.0
Sample A Female 160.0
Sample B Female 223.6
Sample C Male 295.2
Sample D Male 192.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.