BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:36.1 nTPM
HPA:36.1 nTPM
GTEx:35.1 nTPM
FANTOM5:46.0 Scaled Tags Per Million
Pig:21.8 nTPM
Mouse:14.7 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045696
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.3
2481 Female, age 94, left hemisphere 36.3
2846 Female, age 79, unknown 35.7
2289 Male, age 61, right hemisphere 35.4
1781 Male, age 74, unknown 34.3
1854 Male, age 80, left hemisphere 34.1
2290 Female, age 72, unknown 33.5
1857 Female, age 85, left hemisphere 32.7
2288 Male, age 75, left hemisphere 32.4
Claustrum
nTPM: 33.5
2196 Female, age 79, unknown 35.4
2292 Female, age 85, both hemispheres 34.7
1956 Male, age 74, unknown 34.6
2198 Male, age 80, both hemispheres 33.9
2491 Male, age 75, both hemispheres 33.2
2284 Female, age 91, both hemispheres 33.1
2645 Female, age 72, unknown 33.0
2568 Male, age 61, both hemispheres 32.8
2392 Female, age 94, both hemispheres 30.9
Globus pallidus, externus
nTPM: 36.1
1996 Male, age 80, right hemisphere 39.7
2646 Male, age 61, right hemisphere 36.5
2772 Female, age 79, unknown 36.1
2567 Female, age 72, unknown 34.8
2395 Male, age 75, both hemispheres 33.2
Globus pallidus, internus
nTPM: 35.7
2111 Female, age 85, right hemisphere 39.3
2778 Female, age 91, both hemispheres 35.8
2287 Male, age 75, right hemisphere 35.7
2566 Female, age 72, unknown 35.3
1818 Male, age 74, unknown 34.7
2037 Male, age 80, right hemisphere 34.6
2483 Female, age 94, right hemisphere 34.5
Nucleus accumbens
nTPM: 33.3
1806 Female, age 85, left hemisphere 34.3
1783 Male, age 74, unknown 34.2
2391 Female, age 94, left hemisphere 34.0
2698 Female, age 72, unknown 33.6
2732 Male, age 80, right hemisphere 33.5
2824 Male, age 61, right hemisphere 32.3
2286 Male, age 75, left hemisphere 32.2
1856 Female, age 91, right hemisphere 32.1
Nucleus basalis of Meynert
nTPM: 33.9
2569 Male, age 61, both hemispheres 35.0
2484 Female, age 94, left hemisphere 34.0
2821 Male, age 75, both hemispheres 33.6
2393 Male, age 80, right hemisphere 33.0
Nucleus of the diagonal band
nTPM: 31.7
2195 Female, age 85, both hemispheres 32.1
1812 Female, age 91, both hemispheres 32.0
2775 Male, age 80, right hemisphere 31.7
1979 Male, age 74, unknown 31.5
2029 Male, age 61, right hemisphere 31.4
Olfactory tubercle
nTPM: 31.7
1846 Male, age 80, right hemisphere 32.1
2856 Male, age 75, right hemisphere 32.0
2487 Female, age 94, left hemisphere 31.9
1998 Female, age 91, both hemispheres 30.9
Putamen
nTPM: 33.6
2482 Female, age 94, left hemisphere 35.9
2489 Female, age 72, unknown 35.2
1829 Male, age 74, unknown 33.2
2466 Female, age 79, unknown 33.2
2647 Male, age 75, left hemisphere 33.1
1838 Male, age 80, right hemisphere 32.6
1937 Female, age 91, right hemisphere 32.1
Septal nuclei
nTPM: 32.4
2394 Male, age 61, left hemisphere 34.6
2199 Male, age 80, right hemisphere 33.6
1960 Male, age 74, unknown 32.8
2059 Female, age 85, both hemispheres 31.8
2009 Female, age 91, both hemispheres 31.3
2629 Female, age 94, right hemisphere 31.3
2031 Female, age 72, unknown 31.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.9
Samples: 246

Max nTPM: 85.6
Min nTPM: 13.4
Std nTPM: 10.0
Median nTPM: 29.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 85.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 62.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 62.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 61.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 61.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 60.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 56.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 54.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 53.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 51.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 50.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.5
Samples: 246

Max nTPM: 111.7
Min nTPM: 11.6
Std nTPM: 12.7
Median nTPM: 26.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 111.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 96.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 78.5
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 71.4
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 67.1
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 60.9
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 59.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 57.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 53.6
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 52.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 51.1
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Brain - Putamen (basal ganglia)
Average nTPM: 35.1
Samples: 205

Max nTPM: 97.6
Min nTPM: 17.2
Std nTPM: 11.9
Median nTPM: 33.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 97.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 94.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 73.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 71.4
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 66.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 65.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 65.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 65.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 61.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 60.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 57.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.8
FF:10164-103B2 76 years, female 32.8
Globus pallidus
Scaled Tags Per Million: 46.0
FF:10161-103A8 76 years, female 54.9
FF:10175-103C4 60 years, female 37.1
Nucleus accumbens
Scaled Tags Per Million: 26.7
FF:10037-101F1 23-56 years, mixed 26.7
Putamen
Scaled Tags Per Million: 32.2
FF:10176-103C5 60 years, female 32.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.8
Pig sample Sample description nTPM
Caudate
nTPM: 15.8
Samples: 4

Max nTPM: 16.9
Min nTPM: 14.6
Sample A Female 15.3
Sample B Female 16.9
Sample C Male 16.5
Sample D Male 14.6
Putamen
nTPM: 21.4
Samples: 4

Max nTPM: 26.3
Min nTPM: 13.6
Sample A Female 25.9
Sample B Female 13.6
Sample C Male 19.8
Sample D Male 26.3
Septum
nTPM: 21.9
Samples: 4

Max nTPM: 25.6
Min nTPM: 18.0
Sample A Female 22.7
Sample B Female 18.0
Sample C Male 21.1
Sample D Male 25.6
Ventral pallidum
nTPM: 19.8
Samples: 4

Max nTPM: 26.0
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 18.1
Sample C Male 26.0
Sample D Male 21.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.4
Samples: 4

Max nTPM: 14.5
Min nTPM: 12.1
Sample A Male 13.3
Sample B Male 12.1
Sample C Female 13.8
Sample D Female 14.5
Septum
nTPM: 14.7
Samples: 4

Max nTPM: 15.8
Min nTPM: 13.9
Sample A Male 15.2
Sample B Male 13.9
Sample C Female 13.9
Sample D Female 15.8
Ventral forebrain
nTPM: 14.6
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.6
Sample A Male 14.9
Sample B Male 14.7
Sample C Female 13.6
Sample D Female 15.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
76098402 Antisense, RP_060626_01_H03, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.4
76098402 Antisense, RP_060626_01_H03, Mouse strain C57BL/6J (56 days, male) 0.4

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