MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:68.1 nTPM
HPA:68.1 nTPM
GTEx:66.1 nTPM
FANTOM5:87.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.2
1870 Female, age 42, unknown 69.6
2666 Male, age 74, left hemisphere 67.6
1827 Male, age 72, unknown 67.5
2586 Male, age 75, left hemisphere 66.9
1833 Male, age 53, unknown 66.3
1830 Male, age 51, unknown 66.0
2219 Male, age 76, both hemispheres 65.2
2411 Female, age 72, unknown 64.8
2019 Male, age 18, unknown 63.9
2828 Female, age 72, unknown 63.8
Dorsal raphe nucleus
nTPM: 64.8
2750 Male, age 76, both hemispheres 65.4
1828 Male, age 53, unknown 65.0
2298 Female, age 72, unknown 65.0
2016 Female, age 72, unknown 64.8
2047 Male, age 72, unknown 63.8
Inferior colliculus
nTPM: 67.0
2849 Male, age 72, unknown 68.2
2097 Female, age 72, unknown 68.1
1890 Male, age 53, unknown 66.0
1848 Female, age 42, unknown 65.7
Median raphe nucleus
nTPM: 68.1
2220 Male, age 76, midline 68.1
Pedunculopontine tegmental nucleus
nTPM: 65.5
2334 Male, age 80, both hemispheres 66.8
1921 Female, age 85, both hemispheres 64.8
2338 Male, age 61, both hemispheres 64.8
Periaquaductal grey, anterior
nTPM: 66.1
1947 Male, age 18, unknown 68.8
2502 Female, age 75, unknown 65.9
1795 Male, age 51, unknown 63.5
Periaquaductal grey, dorsal
nTPM: 65.2
1840 Male, age 53, unknown 66.3
1831 Male, age 72, unknown 65.6
2850 Male, age 76, both hemispheres 65.5
2464 Female, age 72, unknown 63.5
Periaquaductal grey, lateral
nTPM: 64.3
2053 Male, age 18, unknown 66.0
2140 Male, age 76, both hemispheres 65.1
2272 Male, age 74, both hemispheres 61.7
Pretectal area
nTPM: 65.9
1817 Female, age 42, unknown 68.2
2825 Male, age 18, unknown 67.8
1815 Male, age 53, unknown 67.4
1816 Male, age 51, unknown 67.1
1944 Female, age 72, unknown 66.7
2224 Female, age 72, unknown 66.5
2007 Male, age 72, unknown 66.3
2407 Male, age 75, both hemispheres 65.3
2316 Male, age 76, right hemisphere 63.5
2273 Male, age 74, both hemispheres 63.1
2667 Female, age 75, unknown 62.9
Red nucleus
nTPM: 68.0
2725 Female, age 75, unknown 74.4
2503 Female, age 72, unknown 70.7
1821 Female, age 72, unknown 69.5
1865 Male, age 51, unknown 69.3
1954 Female, age 42, unknown 68.8
2588 Male, age 74, left hemisphere 68.3
2584 Male, age 75, left hemisphere 67.2
1904 Male, age 53, unknown 66.3
2769 Male, age 72, unknown 65.8
2823 Male, age 76, right hemisphere 65.7
2227 Male, age 72, unknown 65.4
2785 Male, age 18, unknown 64.2
Substantia nigra
nTPM: 66.3
2241 Male, age 72, unknown 69.4
1916 Female, age 42, unknown 67.8
1889 Female, age 72, unknown 67.4
2699 Male, age 18, unknown 67.0
1851 Male, age 51, unknown 66.5
1941 Male, age 53, unknown 66.3
2665 Male, age 74, both hemispheres 66.0
2409 Female, age 72, unknown 64.5
2590 Female, age 75, unknown 64.4
2583 Male, age 75, right hemisphere 63.9
Superior colliculus
nTPM: 65.3
1895 Male, age 76, right hemisphere 67.8
2587 Male, age 74, left hemisphere 66.6
1839 Male, age 51, unknown 66.0
2668 Female, age 75, unknown 65.3
1796 Male, age 53, unknown 65.1
2087 Female, age 72, unknown 64.7
2664 Male, age 75, both hemispheres 64.6
1913 Female, age 42, unknown 64.5
1995 Male, age 72, unknown 64.4
2261 Male, age 18, unknown 64.0
Ventral tegmental area
nTPM: 66.5
1915 Female, age 42, unknown 67.7
2223 Female, age 72, unknown 66.9
2410 Female, age 72, unknown 66.5
2218 Male, age 76, both hemispheres 66.4
2021 Male, age 53, unknown 65.7
1942 Male, age 51, unknown 65.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.1
Samples: 139

Max nTPM: 105.8
Min nTPM: 37.4
Std nTPM: 13.1
Median nTPM: 63.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 105.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 105.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 105.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 99.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 94.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 93.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 91.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 88.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 87.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.8
FF:10158-103A5 76 years, female 87.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.