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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:69.8 nTPM
HPA:69.8 nTPM
GTEx:72.7 nTPM
FANTOM5:283.2 Scaled Tags Per Million
Pig:74.5 nTPM
Mouse:342.6 nTPM
Allen mouse:25.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 69.8
Sample id Sample description nTPM
Amygdala
nTPM: 54.9
1987 Female, age 91, left hemisphere 70.5
2514 Male, age 75, right hemisphere 59.3
2814 Male, age 76, right hemisphere 55.8
2517 Female, age 94, left hemisphere 53.6
2695 Female, age 67, right hemisphere 35.1
Basal amygdala
nTPM: 51.0
2609 Male, age 75, right hemisphere 66.1
2243 Female, age 91, right hemisphere 65.7
2685 Female, age 94, left hemisphere 61.2
1955 Male, age 76, both hemispheres 48.7
2110 Male, age 80, left hemisphere 45.6
2827 Female, age 67, right hemisphere 18.8
Central amygdala
nTPM: 60.5
2701 Female, age 91, right hemisphere 76.3
2515 Male, age 75, right hemisphere 60.5
2239 Male, age 80, left hemisphere 59.7
1905 Male, age 76, both hemispheres 53.9
2826 Female, age 94, left hemisphere 51.8
Corticomedial amygdala
nTPM: 55.4
2242 Female, age 91, right hemisphere 72.5
2428 Male, age 75, right hemisphere 61.8
2429 Female, age 94, left hemisphere 60.0
2829 Male, age 80, left hemisphere 59.1
2240 Male, age 76, both hemispheres 47.2
2535 Female, age 67, right hemisphere 31.4
Lateral amygdala
nTPM: 45.8
2255 Female, age 91, right hemisphere 58.8
2534 Female, age 94, left hemisphere 57.9
1883 Male, age 76, both hemispheres 54.7
2516 Male, age 75, right hemisphere 53.8
2256 Male, age 80, left hemisphere 33.5
2830 Female, age 67, right hemisphere 15.8
Stria terminalis, bed nucleus
nTPM: 69.8
1974 Female, age 91, both hemispheres 78.0
2201 Male, age 74, unknown 67.0
2486 Female, age 94, both hemispheres 64.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 72.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 72.7
Samples: 152

Max nTPM: 134.2
Min nTPM: 16.8
Std nTPM: 22.6
Median nTPM: 73.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 134.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 131.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 129.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 123.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 119.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 116.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 114.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 112.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 107.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 106.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 106.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 104.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 103.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 102.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 102.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 100.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 98.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 98.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 96.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 96.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 95.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 95.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 93.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 92.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 90.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 90.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 89.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 89.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 89.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 89.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 89.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 88.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 88.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 87.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 87.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 87.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 87.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 87.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 87.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 85.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 84.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 84.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 84.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 84.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 83.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 83.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 81.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 81.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 80.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 80.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 80.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 80.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 80.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 80.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 80.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 79.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 79.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 79.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 79.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 78.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 78.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 78.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 78.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 76.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 76.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 75.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 75.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 75.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 74.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 73.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 73.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 73.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 73.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 72.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 72.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 72.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 72.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 70.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 70.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 70.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 69.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 69.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 68.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 68.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 68.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 67.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 67.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 66.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 66.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 65.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 64.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 64.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 64.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 63.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 63.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 63.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 63.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 61.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 60.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 58.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 58.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 58.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 58.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 58.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 58.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 57.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 57.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 57.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 56.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 56.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 56.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 56.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 56.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 55.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 55.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 55.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 55.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 54.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 53.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 53.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 52.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 52.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 52.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 51.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 50.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 50.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 50.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 50.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 47.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 47.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 47.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 47.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 46.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 45.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 42.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 41.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 40.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 40.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 40.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 38.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 35.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 34.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 32.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 32.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 31.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 28.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 25.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 283.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 283.2
FF:10151-102I7 76 years, female 283.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 74.5
Pig sample Sample description nTPM
Amygdala
nTPM: 74.5
Samples: 4

Max nTPM: 110.2
Min nTPM: 47.2
Sample A Female 110.2
Sample B Female 47.2
Sample C Male 50.6
Sample D Male 90.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 342.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 342.6
Samples: 4

Max nTPM: 398.1
Min nTPM: 302.1
Sample A Male 398.1
Sample B Male 329.0
Sample C Female 302.1
Sample D Female 341.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 25.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.1
69015619 Antisense, RP_050315_01_D02, Mouse strain C57BL/6J (56 days, male) 25.1

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