MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.1 nTPM
HPA:84.1 nTPM
GTEx:97.6 nTPM
FANTOM5:107.2 Scaled Tags Per Million
Pig:58.7 nTPM
Mouse:81.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.0
2666 Male, age 74, left hemisphere 85.9
2219 Male, age 76, both hemispheres 80.8
1870 Female, age 42, unknown 77.5
2586 Male, age 75, left hemisphere 77.5
1833 Male, age 53, unknown 77.3
1830 Male, age 51, unknown 69.9
2411 Female, age 72, unknown 69.1
2019 Male, age 18, unknown 68.9
1827 Male, age 72, unknown 68.3
2828 Female, age 72, unknown 64.9
Dorsal raphe nucleus
nTPM: 69.8
2016 Female, age 72, unknown 79.7
2047 Male, age 72, unknown 71.4
1828 Male, age 53, unknown 71.3
2750 Male, age 76, both hemispheres 70.0
2298 Female, age 72, unknown 56.6
Inferior colliculus
nTPM: 73.2
2849 Male, age 72, unknown 81.8
1890 Male, age 53, unknown 77.0
1848 Female, age 42, unknown 73.1
2097 Female, age 72, unknown 60.9
Median raphe nucleus
nTPM: 65.1
2220 Male, age 76, midline 65.1
Pedunculopontine tegmental nucleus
nTPM: 65.9
2334 Male, age 80, both hemispheres 70.4
1921 Female, age 85, both hemispheres 67.7
2338 Male, age 61, both hemispheres 59.6
Periaquaductal grey, anterior
nTPM: 71.8
2502 Female, age 75, unknown 76.5
1947 Male, age 18, unknown 74.0
1795 Male, age 51, unknown 64.8
Periaquaductal grey, dorsal
nTPM: 76.5
1840 Male, age 53, unknown 78.7
1831 Male, age 72, unknown 78.5
2850 Male, age 76, both hemispheres 76.4
2464 Female, age 72, unknown 72.3
Periaquaductal grey, lateral
nTPM: 71.3
2140 Male, age 76, both hemispheres 72.3
2053 Male, age 18, unknown 71.2
2272 Male, age 74, both hemispheres 70.5
Pretectal area
nTPM: 71.7
2407 Male, age 75, both hemispheres 83.2
1944 Female, age 72, unknown 77.5
2825 Male, age 18, unknown 77.2
1815 Male, age 53, unknown 74.5
1816 Male, age 51, unknown 73.6
2667 Female, age 75, unknown 71.2
2273 Male, age 74, both hemispheres 69.0
2316 Male, age 76, right hemisphere 67.7
1817 Female, age 42, unknown 67.1
2224 Female, age 72, unknown 66.2
2007 Male, age 72, unknown 61.5
Red nucleus
nTPM: 81.0
1821 Female, age 72, unknown 86.4
1904 Male, age 53, unknown 86.4
2503 Female, age 72, unknown 86.3
1865 Male, age 51, unknown 84.0
2823 Male, age 76, right hemisphere 83.7
2588 Male, age 74, left hemisphere 83.4
2725 Female, age 75, unknown 81.3
1954 Female, age 42, unknown 80.4
2227 Male, age 72, unknown 78.7
2584 Male, age 75, left hemisphere 76.0
2769 Male, age 72, unknown 75.1
2785 Male, age 18, unknown 70.0
Substantia nigra
nTPM: 84.1
2699 Male, age 18, unknown 102.7
1851 Male, age 51, unknown 89.7
2409 Female, age 72, unknown 89.4
2241 Male, age 72, unknown 89.2
1916 Female, age 42, unknown 85.5
2583 Male, age 75, right hemisphere 83.6
2665 Male, age 74, both hemispheres 80.3
2590 Female, age 75, unknown 76.8
1889 Female, age 72, unknown 74.5
1941 Male, age 53, unknown 68.9
Superior colliculus
nTPM: 73.3
1913 Female, age 42, unknown 82.8
1995 Male, age 72, unknown 80.0
2587 Male, age 74, left hemisphere 75.4
2664 Male, age 75, both hemispheres 75.0
1895 Male, age 76, right hemisphere 74.8
2668 Female, age 75, unknown 74.6
1839 Male, age 51, unknown 69.5
2087 Female, age 72, unknown 68.6
1796 Male, age 53, unknown 67.1
2261 Male, age 18, unknown 65.5
Ventral tegmental area
nTPM: 73.9
1942 Male, age 51, unknown 78.7
1915 Female, age 42, unknown 78.3
2021 Male, age 53, unknown 75.0
2410 Female, age 72, unknown 74.6
2223 Female, age 72, unknown 68.9
2218 Male, age 76, both hemispheres 68.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.6
Samples: 139

Max nTPM: 213.3
Min nTPM: 48.6
Std nTPM: 35.0
Median nTPM: 92.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 213.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 207.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 199.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 198.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 191.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 181.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 170.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 166.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 157.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 154.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 150.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 107.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.2
FF:10158-103A5 76 years, female 107.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.7
Pig sample Sample description nTPM
Midbrain
nTPM: 58.7
Samples: 4

Max nTPM: 60.3
Min nTPM: 54.1
Sample A Female 60.2
Sample B Female 60.3
Sample C Male 60.3
Sample D Male 54.1
Periaqueductal gray
nTPM: 49.7
Samples: 3

Max nTPM: 52.9
Min nTPM: 43.8
Sample B Female 52.9
Sample C Male 52.5
Sample D Male 43.8
Substantia nigra
nTPM: 57.7
Samples: 4

Max nTPM: 66.7
Min nTPM: 48.3
Sample A Female 58.4
Sample B Female 48.3
Sample C Male 66.7
Sample D Male 57.5
Superior colliculi
nTPM: 51.5
Samples: 4

Max nTPM: 61.1
Min nTPM: 36.8
Sample A Female 51.3
Sample B Female 36.8
Sample C Male 61.1
Sample D Male 56.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.5
Samples: 4

Max nTPM: 88.3
Min nTPM: 75.3
Sample A Male 75.3
Sample B Male 79.7
Sample C Female 88.3
Sample D Female 82.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
77620471 Antisense, RP_070129_03_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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