BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2.4 nTPM
HPA:2.4 nTPM
GTEx:1.7 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:6.3 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.1
2288 Male, age 75, left hemisphere 2.3
1854 Male, age 80, left hemisphere 2.2
1857 Female, age 85, left hemisphere 2.2
2290 Female, age 72, unknown 2.2
2846 Female, age 79, unknown 2.2
1781 Male, age 74, unknown 2.1
2289 Male, age 61, right hemisphere 1.9
2481 Female, age 94, left hemisphere 1.9
Claustrum
nTPM: 2.2
2491 Male, age 75, both hemispheres 2.6
2292 Female, age 85, both hemispheres 2.2
2568 Male, age 61, both hemispheres 2.2
2196 Female, age 79, unknown 2.1
2198 Male, age 80, both hemispheres 2.1
2392 Female, age 94, both hemispheres 2.1
2645 Female, age 72, unknown 2.1
1956 Male, age 74, unknown 2.0
2284 Female, age 91, both hemispheres 1.9
Globus pallidus, externus
nTPM: 2.3
2646 Male, age 61, right hemisphere 2.5
2567 Female, age 72, unknown 2.4
1996 Male, age 80, right hemisphere 2.2
2395 Male, age 75, both hemispheres 2.1
2772 Female, age 79, unknown 2.1
Globus pallidus, internus
nTPM: 2.4
2566 Female, age 72, unknown 2.8
2287 Male, age 75, right hemisphere 2.7
1818 Male, age 74, unknown 2.4
2037 Male, age 80, right hemisphere 2.4
2111 Female, age 85, right hemisphere 2.2
2778 Female, age 91, both hemispheres 2.2
2483 Female, age 94, right hemisphere 2.1
Nucleus accumbens
nTPM: 2.1
2286 Male, age 75, left hemisphere 2.3
2698 Female, age 72, unknown 2.3
2732 Male, age 80, right hemisphere 2.2
1806 Female, age 85, left hemisphere 2.1
2391 Female, age 94, left hemisphere 2.1
1783 Male, age 74, unknown 2.0
1856 Female, age 91, right hemisphere 2.0
2824 Male, age 61, right hemisphere 2.0
Nucleus basalis of Meynert
nTPM: 2.2
2569 Male, age 61, both hemispheres 2.3
2393 Male, age 80, right hemisphere 2.2
2484 Female, age 94, left hemisphere 2.1
2821 Male, age 75, both hemispheres 2.1
Nucleus of the diagonal band
nTPM: 2.0
1979 Male, age 74, unknown 2.8
2195 Female, age 85, both hemispheres 2.0
1812 Female, age 91, both hemispheres 1.9
2029 Male, age 61, right hemisphere 1.7
2775 Male, age 80, right hemisphere 1.7
Olfactory tubercle
nTPM: 1.9
1998 Female, age 91, both hemispheres 2.0
2856 Male, age 75, right hemisphere 1.9
1846 Male, age 80, right hemisphere 1.8
2487 Female, age 94, left hemisphere 1.8
Putamen
nTPM: 2.1
1937 Female, age 91, right hemisphere 2.3
1838 Male, age 80, right hemisphere 2.1
2482 Female, age 94, left hemisphere 2.1
2489 Female, age 72, unknown 2.1
2647 Male, age 75, left hemisphere 2.1
1829 Male, age 74, unknown 2.0
2466 Female, age 79, unknown 2.0
Septal nuclei
nTPM: 2.0
2199 Male, age 80, right hemisphere 2.3
2394 Male, age 61, left hemisphere 2.3
2059 Female, age 85, both hemispheres 2.1
2629 Female, age 94, right hemisphere 2.0
1960 Male, age 74, unknown 1.9
2031 Female, age 72, unknown 1.9
2009 Female, age 91, both hemispheres 1.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.3
Samples: 246

Max nTPM: 4.5
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 1.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 4.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 4.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 3.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 3.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 2.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 2.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.7
Samples: 246

Max nTPM: 4.7
Min nTPM: 0.0
Std nTPM: 0.7
Median nTPM: 1.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 4.7
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 4.2
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 3.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 3.8
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 3.7
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 3.7
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 3.6
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 3.5
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 3.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 3.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 3.3
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Brain - Putamen (basal ganglia)
Average nTPM: 1.6
Samples: 205

Max nTPM: 4.3
Min nTPM: 0.0
Std nTPM: 0.7
Median nTPM: 1.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 4.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 4.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 4.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 4.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 4.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 3.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 3.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 3.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 3.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 3.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 3.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.3
Pig sample Sample description nTPM
Caudate
nTPM: 6.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.1
Sample A Female 7.7
Sample B Female 5.8
Sample C Male 5.1
Sample D Male 6.1
Putamen
nTPM: 6.3
Samples: 4

Max nTPM: 13.5
Min nTPM: 1.9
Sample A Female 4.4
Sample B Female 13.5
Sample C Male 1.9
Sample D Male 5.3
Septum
nTPM: 3.8
Samples: 4

Max nTPM: 6.1
Min nTPM: 1.2
Sample A Female 4.0
Sample B Female 6.1
Sample C Male 1.2
Sample D Male 4.0
Ventral pallidum
nTPM: 6.3
Samples: 4

Max nTPM: 11.9
Min nTPM: 1.9
Sample A Female 11.9
Sample B Female 5.5
Sample C Male 1.9
Sample D Male 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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