MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.6 nTPM
HPA:81.6 nTPM
GTEx:61.2 nTPM
FANTOM5:109.4 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:17.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.4
2411 Female, age 72, unknown 87.3
1870 Female, age 42, unknown 79.5
1830 Male, age 51, unknown 78.6
2019 Male, age 18, unknown 74.0
1833 Male, age 53, unknown 71.7
2586 Male, age 75, left hemisphere 68.4
2828 Female, age 72, unknown 67.6
2666 Male, age 74, left hemisphere 53.1
1827 Male, age 72, unknown 48.6
2219 Male, age 76, both hemispheres 45.3
Dorsal raphe nucleus
nTPM: 55.3
2750 Male, age 76, both hemispheres 94.0
2016 Female, age 72, unknown 54.7
1828 Male, age 53, unknown 49.3
2298 Female, age 72, unknown 39.8
2047 Male, age 72, unknown 38.7
Inferior colliculus
nTPM: 49.1
1890 Male, age 53, unknown 52.3
2849 Male, age 72, unknown 49.6
1848 Female, age 42, unknown 49.2
2097 Female, age 72, unknown 45.2
Median raphe nucleus
nTPM: 40.5
2220 Male, age 76, midline 40.5
Pedunculopontine tegmental nucleus
nTPM: 64.8
2338 Male, age 61, both hemispheres 80.0
2334 Male, age 80, both hemispheres 61.5
1921 Female, age 85, both hemispheres 52.8
Periaquaductal grey, anterior
nTPM: 47.1
2502 Female, age 75, unknown 55.6
1947 Male, age 18, unknown 45.0
1795 Male, age 51, unknown 40.6
Periaquaductal grey, dorsal
nTPM: 38.6
2464 Female, age 72, unknown 54.7
1831 Male, age 72, unknown 38.0
2850 Male, age 76, both hemispheres 31.3
1840 Male, age 53, unknown 30.4
Periaquaductal grey, lateral
nTPM: 43.9
2272 Male, age 74, both hemispheres 55.5
2053 Male, age 18, unknown 44.3
2140 Male, age 76, both hemispheres 31.8
Pretectal area
nTPM: 48.4
2316 Male, age 76, right hemisphere 72.2
1815 Male, age 53, unknown 57.0
2407 Male, age 75, both hemispheres 52.7
2007 Male, age 72, unknown 52.5
2825 Male, age 18, unknown 50.3
2273 Male, age 74, both hemispheres 49.7
1817 Female, age 42, unknown 48.5
2667 Female, age 75, unknown 42.9
2224 Female, age 72, unknown 42.0
1944 Female, age 72, unknown 33.3
1816 Male, age 51, unknown 31.0
Red nucleus
nTPM: 81.6
2769 Male, age 72, unknown 95.9
2227 Male, age 72, unknown 95.3
2785 Male, age 18, unknown 93.4
1904 Male, age 53, unknown 91.8
2823 Male, age 76, right hemisphere 87.2
1865 Male, age 51, unknown 87.0
1821 Female, age 72, unknown 78.7
2503 Female, age 72, unknown 76.6
1954 Female, age 42, unknown 71.9
2588 Male, age 74, left hemisphere 69.7
2584 Male, age 75, left hemisphere 65.8
2725 Female, age 75, unknown 65.4
Substantia nigra
nTPM: 44.6
1851 Male, age 51, unknown 56.6
2583 Male, age 75, right hemisphere 54.5
1889 Female, age 72, unknown 52.9
2590 Female, age 75, unknown 47.0
2699 Male, age 18, unknown 44.0
1941 Male, age 53, unknown 43.9
1916 Female, age 42, unknown 39.1
2409 Female, age 72, unknown 38.4
2665 Male, age 74, both hemispheres 36.0
2241 Male, age 72, unknown 33.2
Superior colliculus
nTPM: 61.3
1913 Female, age 42, unknown 92.3
1995 Male, age 72, unknown 91.3
1895 Male, age 76, right hemisphere 68.5
2587 Male, age 74, left hemisphere 65.3
1839 Male, age 51, unknown 62.6
2668 Female, age 75, unknown 60.9
1796 Male, age 53, unknown 51.7
2261 Male, age 18, unknown 41.9
2664 Male, age 75, both hemispheres 41.3
2087 Female, age 72, unknown 37.0
Ventral tegmental area
nTPM: 56.4
2223 Female, age 72, unknown 68.3
2410 Female, age 72, unknown 65.0
1942 Male, age 51, unknown 56.5
2021 Male, age 53, unknown 51.6
1915 Female, age 42, unknown 50.6
2218 Male, age 76, both hemispheres 46.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.2
Samples: 139

Max nTPM: 187.8
Min nTPM: 19.4
Std nTPM: 31.0
Median nTPM: 53.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 187.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 183.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 181.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 167.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 145.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 127.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 119.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 116.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 113.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 113.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 110.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.4
FF:10158-103A5 76 years, female 109.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 64.7
Min nTPM: 18.1
Sample A Female 64.7
Sample B Female 31.6
Sample C Male 18.1
Sample D Male 20.9
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 25.8
Min nTPM: 18.0
Sample B Female 25.8
Sample C Male 18.0
Sample D Male 23.2
Substantia nigra
nTPM: 35.6
Samples: 4

Max nTPM: 53.8
Min nTPM: 22.6
Sample A Female 38.2
Sample B Female 27.7
Sample C Male 22.6
Sample D Male 53.8
Superior colliculi
nTPM: 27.8
Samples: 4

Max nTPM: 39.7
Min nTPM: 13.3
Sample A Female 39.7
Sample B Female 13.3
Sample C Male 23.4
Sample D Male 34.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 21.8
Min nTPM: 14.3
Sample A Male 21.8
Sample B Male 16.5
Sample C Female 14.3
Sample D Female 17.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
72007936 Antisense, RP_051017_01_B05, Mouse strain C57BL/6J (56 days, male) 0.5
67792190 Antisense, RP_040920_01_C08, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.