MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:104.5 nTPM
HPA:104.5 nTPM
GTEx:53.1 nTPM
FANTOM5:79.2 Scaled Tags Per Million
Pig:49.3 nTPM
Mouse:23.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.3
2586 Male, age 75, left hemisphere 119.8
2828 Female, age 72, unknown 104.1
1827 Male, age 72, unknown 81.0
1870 Female, age 42, unknown 76.2
2666 Male, age 74, left hemisphere 72.2
1833 Male, age 53, unknown 69.9
1830 Male, age 51, unknown 69.1
2219 Male, age 76, both hemispheres 67.3
2411 Female, age 72, unknown 63.2
2019 Male, age 18, unknown 60.5
Dorsal raphe nucleus
nTPM: 84.4
2016 Female, age 72, unknown 96.4
1828 Male, age 53, unknown 89.6
2298 Female, age 72, unknown 83.9
2047 Male, age 72, unknown 82.1
2750 Male, age 76, both hemispheres 69.7
Inferior colliculus
nTPM: 75.9
1848 Female, age 42, unknown 82.9
2849 Male, age 72, unknown 78.8
1890 Male, age 53, unknown 72.7
2097 Female, age 72, unknown 69.0
Median raphe nucleus
nTPM: 64.9
2220 Male, age 76, midline 64.9
Pedunculopontine tegmental nucleus
nTPM: 67.6
1921 Female, age 85, both hemispheres 71.8
2334 Male, age 80, both hemispheres 70.6
2338 Male, age 61, both hemispheres 60.3
Periaquaductal grey, anterior
nTPM: 97.8
1795 Male, age 51, unknown 110.3
2502 Female, age 75, unknown 94.7
1947 Male, age 18, unknown 88.4
Periaquaductal grey, dorsal
nTPM: 99.6
1840 Male, age 53, unknown 110.3
2850 Male, age 76, both hemispheres 107.4
1831 Male, age 72, unknown 105.4
2464 Female, age 72, unknown 75.4
Periaquaductal grey, lateral
nTPM: 104.5
2053 Male, age 18, unknown 122.0
2140 Male, age 76, both hemispheres 108.9
2272 Male, age 74, both hemispheres 82.5
Pretectal area
nTPM: 91.4
2273 Male, age 74, both hemispheres 122.5
2667 Female, age 75, unknown 109.8
2825 Male, age 18, unknown 96.2
1944 Female, age 72, unknown 93.5
1816 Male, age 51, unknown 90.8
2407 Male, age 75, both hemispheres 90.3
2316 Male, age 76, right hemisphere 89.7
1815 Male, age 53, unknown 82.9
2224 Female, age 72, unknown 82.4
1817 Female, age 42, unknown 79.7
2007 Male, age 72, unknown 68.0
Red nucleus
nTPM: 69.1
2584 Male, age 75, left hemisphere 78.4
2823 Male, age 76, right hemisphere 76.1
2725 Female, age 75, unknown 74.0
2769 Male, age 72, unknown 71.1
2227 Male, age 72, unknown 69.4
1954 Female, age 42, unknown 69.3
2503 Female, age 72, unknown 66.8
2588 Male, age 74, left hemisphere 66.7
1865 Male, age 51, unknown 65.5
1904 Male, age 53, unknown 65.3
1821 Female, age 72, unknown 64.4
2785 Male, age 18, unknown 62.7
Substantia nigra
nTPM: 83.3
2699 Male, age 18, unknown 107.7
1851 Male, age 51, unknown 88.4
1916 Female, age 42, unknown 87.1
2583 Male, age 75, right hemisphere 87.1
2409 Female, age 72, unknown 83.1
2590 Female, age 75, unknown 81.3
2665 Male, age 74, both hemispheres 80.4
1889 Female, age 72, unknown 77.0
2241 Male, age 72, unknown 71.0
1941 Male, age 53, unknown 70.3
Superior colliculus
nTPM: 93.6
1995 Male, age 72, unknown 119.8
2664 Male, age 75, both hemispheres 116.1
1796 Male, age 53, unknown 102.2
2087 Female, age 72, unknown 95.5
1913 Female, age 42, unknown 95.2
2261 Male, age 18, unknown 92.3
1839 Male, age 51, unknown 85.1
2587 Male, age 74, left hemisphere 81.3
1895 Male, age 76, right hemisphere 74.6
2668 Female, age 75, unknown 73.4
Ventral tegmental area
nTPM: 79.0
2021 Male, age 53, unknown 92.5
1915 Female, age 42, unknown 84.6
1942 Male, age 51, unknown 81.3
2218 Male, age 76, both hemispheres 74.8
2410 Female, age 72, unknown 72.7
2223 Female, age 72, unknown 68.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.1
Samples: 139

Max nTPM: 141.0
Min nTPM: 6.1
Std nTPM: 24.9
Median nTPM: 50.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 141.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 129.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 125.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 120.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 117.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 110.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 104.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 94.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 91.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 89.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 88.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.2
FF:10158-103A5 76 years, female 79.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.3
Pig sample Sample description nTPM
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 104.0
Min nTPM: 26.7
Sample A Female 104.0
Sample B Female 26.7
Sample C Male 38.3
Sample D Male 28.4
Periaqueductal gray
nTPM: 33.0
Samples: 3

Max nTPM: 34.7
Min nTPM: 31.8
Sample B Female 32.5
Sample C Male 31.8
Sample D Male 34.7
Substantia nigra
nTPM: 43.4
Samples: 4

Max nTPM: 54.4
Min nTPM: 33.6
Sample A Female 45.6
Sample B Female 40.1
Sample C Male 33.6
Sample D Male 54.4
Superior colliculi
nTPM: 37.7
Samples: 4

Max nTPM: 42.3
Min nTPM: 34.5
Sample A Female 39.5
Sample B Female 34.5
Sample C Male 34.5
Sample D Male 42.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 27.1
Min nTPM: 19.9
Sample A Male 27.1
Sample B Male 23.2
Sample C Female 19.9
Sample D Female 22.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71723875 Antisense, RP_050921_01_A11, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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