BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:89.7 nTPM
HPA:89.7 nTPM
GTEx:61.8 nTPM
FANTOM5:64.9 Scaled Tags Per Million
Mouse:75.5 nTPM
Allen mouse:7.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA024821Antibody HPA058548
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 89.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 83.6
2288 Male, age 75, left hemisphere 86.6
2481 Female, age 94, left hemisphere 85.9
1781 Male, age 74, unknown 85.2
2290 Female, age 72, unknown 84.8
2846 Female, age 79, unknown 84.4
2289 Male, age 61, right hemisphere 82.6
1854 Male, age 80, left hemisphere 80.1
1857 Female, age 85, left hemisphere 78.8
Claustrum
nTPM: 84.9
2292 Female, age 85, both hemispheres 88.2
2196 Female, age 79, unknown 87.5
1956 Male, age 74, unknown 87.2
2198 Male, age 80, both hemispheres 85.5
2645 Female, age 72, unknown 85.1
2284 Female, age 91, both hemispheres 83.9
2568 Male, age 61, both hemispheres 83.8
2491 Male, age 75, both hemispheres 83.3
2392 Female, age 94, both hemispheres 79.3
Globus pallidus, externus
nTPM: 89.5
2646 Male, age 61, right hemisphere 94.5
2772 Female, age 79, unknown 90.8
1996 Male, age 80, right hemisphere 89.6
2567 Female, age 72, unknown 88.9
2395 Male, age 75, both hemispheres 83.8
Globus pallidus, internus
nTPM: 89.7
2483 Female, age 94, right hemisphere 91.3
2778 Female, age 91, both hemispheres 90.6
2287 Male, age 75, right hemisphere 90.3
2111 Female, age 85, right hemisphere 90.0
2566 Female, age 72, unknown 89.8
2037 Male, age 80, right hemisphere 88.2
1818 Male, age 74, unknown 87.4
Nucleus accumbens
nTPM: 82.7
1783 Male, age 74, unknown 85.6
2286 Male, age 75, left hemisphere 85.4
2391 Female, age 94, left hemisphere 84.5
2698 Female, age 72, unknown 84.4
1806 Female, age 85, left hemisphere 82.5
2732 Male, age 80, right hemisphere 81.5
2824 Male, age 61, right hemisphere 79.4
1856 Female, age 91, right hemisphere 78.8
Nucleus basalis of Meynert
nTPM: 84.8
2569 Male, age 61, both hemispheres 97.0
2821 Male, age 75, both hemispheres 82.7
2484 Female, age 94, left hemisphere 82.3
2393 Male, age 80, right hemisphere 77.2
Nucleus of the diagonal band
nTPM: 81.3
1979 Male, age 74, unknown 84.7
1812 Female, age 91, both hemispheres 80.8
2195 Female, age 85, both hemispheres 80.7
2775 Male, age 80, right hemisphere 80.3
2029 Male, age 61, right hemisphere 80.1
Olfactory tubercle
nTPM: 81.5
1846 Male, age 80, right hemisphere 83.3
1998 Female, age 91, both hemispheres 81.4
2856 Male, age 75, right hemisphere 81.2
2487 Female, age 94, left hemisphere 80.2
Putamen
nTPM: 83.2
2647 Male, age 75, left hemisphere 91.0
2482 Female, age 94, left hemisphere 85.9
2489 Female, age 72, unknown 85.3
2466 Female, age 79, unknown 80.7
1937 Female, age 91, right hemisphere 80.6
1829 Male, age 74, unknown 80.2
1838 Male, age 80, right hemisphere 79.0
Septal nuclei
nTPM: 81.5
1960 Male, age 74, unknown 83.2
2199 Male, age 80, right hemisphere 82.8
2394 Male, age 61, left hemisphere 82.3
2031 Female, age 72, unknown 81.6
2629 Female, age 94, right hemisphere 81.3
2059 Female, age 85, both hemispheres 81.1
2009 Female, age 91, both hemispheres 78.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 61.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.0
Samples: 246

Max nTPM: 90.3
Min nTPM: 29.0
Std nTPM: 10.6
Median nTPM: 57.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 90.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 87.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 86.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 85.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 85.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 84.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 84.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 84.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 79.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 78.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 77.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.9
Samples: 246

Max nTPM: 131.1
Min nTPM: 31.7
Std nTPM: 14.1
Median nTPM: 58.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 131.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 109.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 104.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 101.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 96.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 96.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 91.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 91.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 90.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 90.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 89.9
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Brain - Putamen (basal ganglia)
Average nTPM: 61.8
Samples: 205

Max nTPM: 96.4
Min nTPM: 27.9
Std nTPM: 11.3
Median nTPM: 60.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 96.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 95.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 94.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 91.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 88.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 85.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 83.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 83.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 82.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 82.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 81.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 64.9
FF:10164-103B2 76 years, female 64.9
Globus pallidus
Scaled Tags Per Million: 57.8
FF:10161-103A8 76 years, female 62.8
FF:10175-103C4 60 years, female 52.8
Nucleus accumbens
Scaled Tags Per Million: 59.1
FF:10037-101F1 23-56 years, mixed 59.1
Putamen
Scaled Tags Per Million: 49.5
FF:10176-103C5 60 years, female 49.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 75.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 75.6
Samples: 4

Max nTPM: 77.6
Min nTPM: 71.7
Sample A Male 77.3
Sample B Male 77.6
Sample C Female 71.7
Sample D Female 75.6
Septum
nTPM: 63.9
Samples: 4

Max nTPM: 65.7
Min nTPM: 62.0
Sample A Male 62.0
Sample B Male 65.7
Sample C Female 64.2
Sample D Female 63.6
Ventral forebrain
nTPM: 66.9
Samples: 4

Max nTPM: 71.6
Min nTPM: 62.8
Sample A Male 68.8
Sample B Male 64.2
Sample C Female 71.6
Sample D Female 62.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.0
69080508 Antisense, RP_050324_02_B09, Mouse strain C57BL/6J (56 days, male) 7.0
Pallidum
Expression energy: 5.5
69080508 Antisense, RP_050324_02_B09, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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