MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA:16.6 nTPM
GTEx:15.7 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:8.1 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.1
2666 Male, age 74, left hemisphere 18.4
2019 Male, age 18, unknown 16.5
2828 Female, age 72, unknown 15.4
1830 Male, age 51, unknown 14.6
1833 Male, age 53, unknown 14.3
1870 Female, age 42, unknown 14.2
2411 Female, age 72, unknown 13.7
1827 Male, age 72, unknown 11.9
2586 Male, age 75, left hemisphere 11.3
2219 Male, age 76, both hemispheres 11.2
Dorsal raphe nucleus
nTPM: 13.3
2750 Male, age 76, both hemispheres 15.5
1828 Male, age 53, unknown 14.5
2047 Male, age 72, unknown 12.7
2016 Female, age 72, unknown 12.0
2298 Female, age 72, unknown 11.5
Inferior colliculus
nTPM: 13.4
1890 Male, age 53, unknown 15.3
1848 Female, age 42, unknown 13.3
2097 Female, age 72, unknown 12.8
2849 Male, age 72, unknown 12.3
Median raphe nucleus
nTPM: 12.5
2220 Male, age 76, midline 12.5
Pedunculopontine tegmental nucleus
nTPM: 14.4
2338 Male, age 61, both hemispheres 15.6
2334 Male, age 80, both hemispheres 15.3
1921 Female, age 85, both hemispheres 12.4
Periaquaductal grey, anterior
nTPM: 12.7
2502 Female, age 75, unknown 13.8
1947 Male, age 18, unknown 13.0
1795 Male, age 51, unknown 11.2
Periaquaductal grey, dorsal
nTPM: 11.5
2464 Female, age 72, unknown 12.9
1831 Male, age 72, unknown 12.6
2850 Male, age 76, both hemispheres 10.6
1840 Male, age 53, unknown 10.0
Periaquaductal grey, lateral
nTPM: 11.7
2053 Male, age 18, unknown 12.6
2272 Male, age 74, both hemispheres 11.4
2140 Male, age 76, both hemispheres 11.0
Pretectal area
nTPM: 12.3
1817 Female, age 42, unknown 15.1
2007 Male, age 72, unknown 13.9
1944 Female, age 72, unknown 13.7
1815 Male, age 53, unknown 13.4
2316 Male, age 76, right hemisphere 12.9
1816 Male, age 51, unknown 12.6
2667 Female, age 75, unknown 11.9
2825 Male, age 18, unknown 11.5
2224 Female, age 72, unknown 11.4
2407 Male, age 75, both hemispheres 9.7
2273 Male, age 74, both hemispheres 9.4
Red nucleus
nTPM: 16.6
2588 Male, age 74, left hemisphere 19.0
2823 Male, age 76, right hemisphere 19.0
1954 Female, age 42, unknown 18.3
1904 Male, age 53, unknown 17.2
2769 Male, age 72, unknown 17.2
1821 Female, age 72, unknown 17.0
2227 Male, age 72, unknown 16.9
1865 Male, age 51, unknown 16.3
2503 Female, age 72, unknown 15.1
2785 Male, age 18, unknown 15.1
2725 Female, age 75, unknown 14.3
2584 Male, age 75, left hemisphere 13.5
Substantia nigra
nTPM: 14.1
2665 Male, age 74, both hemispheres 21.0
2409 Female, age 72, unknown 14.8
1851 Male, age 51, unknown 14.5
1889 Female, age 72, unknown 13.6
1916 Female, age 42, unknown 13.6
2241 Male, age 72, unknown 13.6
2590 Female, age 75, unknown 13.6
2699 Male, age 18, unknown 12.6
1941 Male, age 53, unknown 11.7
2583 Male, age 75, right hemisphere 11.6
Superior colliculus
nTPM: 12.6
1895 Male, age 76, right hemisphere 14.5
2587 Male, age 74, left hemisphere 14.5
2087 Female, age 72, unknown 14.1
2668 Female, age 75, unknown 13.4
1839 Male, age 51, unknown 12.3
1796 Male, age 53, unknown 12.2
1995 Male, age 72, unknown 12.2
1913 Female, age 42, unknown 11.9
2261 Male, age 18, unknown 11.9
2664 Male, age 75, both hemispheres 9.4
Ventral tegmental area
nTPM: 13.3
2218 Male, age 76, both hemispheres 14.6
2410 Female, age 72, unknown 13.5
1942 Male, age 51, unknown 13.4
1915 Female, age 42, unknown 13.0
2223 Female, age 72, unknown 12.9
2021 Male, age 53, unknown 12.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 139

Max nTPM: 74.8
Min nTPM: 3.1
Std nTPM: 10.6
Median nTPM: 12.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 74.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 52.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 45.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 44.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 40.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 40.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 39.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 37.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 36.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 35.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.8
FF:10158-103A5 76 years, female 21.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.8
Pig sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.2
Sample A Female 10.0
Sample B Female 8.2
Sample C Male 9.0
Sample D Male 8.2
Periaqueductal gray
nTPM: 4.2
Samples: 3

Max nTPM: 4.8
Min nTPM: 3.7
Sample B Female 4.8
Sample C Male 4.2
Sample D Male 3.7
Substantia nigra
nTPM: 13.3
Samples: 4

Max nTPM: 24.7
Min nTPM: 7.8
Sample A Female 8.8
Sample B Female 24.7
Sample C Male 7.8
Sample D Male 11.7
Superior colliculi
nTPM: 18.8
Samples: 4

Max nTPM: 34.8
Min nTPM: 9.4
Sample A Female 18.8
Sample B Female 34.8
Sample C Male 9.4
Sample D Male 12.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.5
Sample A Male 8.0
Sample B Male 7.5
Sample C Female 8.3
Sample D Female 8.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
77931975 Antisense, RP_070219_02_C05, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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