BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:21.2 nTPM
HPA:21.2 nTPM
GTEx:24.7 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:4.7 nTPM
Mouse:20.8 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA015568
Glial cells Low
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.0
1854 Male, age 80, left hemisphere 24.0
2481 Female, age 94, left hemisphere 19.8
1857 Female, age 85, left hemisphere 19.3
2289 Male, age 61, right hemisphere 19.0
2290 Female, age 72, unknown 15.7
1781 Male, age 74, unknown 15.5
2288 Male, age 75, left hemisphere 15.3
2846 Female, age 79, unknown 15.0
Claustrum
nTPM: 14.5
2491 Male, age 75, both hemispheres 18.0
2645 Female, age 72, unknown 15.2
2284 Female, age 91, both hemispheres 14.7
2198 Male, age 80, both hemispheres 14.5
2392 Female, age 94, both hemispheres 14.4
2292 Female, age 85, both hemispheres 14.1
1956 Male, age 74, unknown 13.9
2568 Male, age 61, both hemispheres 13.6
2196 Female, age 79, unknown 12.2
Globus pallidus, externus
nTPM: 10.8
2646 Male, age 61, right hemisphere 12.9
1996 Male, age 80, right hemisphere 10.7
2772 Female, age 79, unknown 10.7
2567 Female, age 72, unknown 10.1
2395 Male, age 75, both hemispheres 9.8
Globus pallidus, internus
nTPM: 10.3
2483 Female, age 94, right hemisphere 13.0
1818 Male, age 74, unknown 10.8
2566 Female, age 72, unknown 10.5
2037 Male, age 80, right hemisphere 10.0
2111 Female, age 85, right hemisphere 9.5
2287 Male, age 75, right hemisphere 9.4
2778 Female, age 91, both hemispheres 8.9
Nucleus accumbens
nTPM: 16.2
1806 Female, age 85, left hemisphere 18.8
1856 Female, age 91, right hemisphere 18.6
2286 Male, age 75, left hemisphere 16.8
2824 Male, age 61, right hemisphere 16.3
2732 Male, age 80, right hemisphere 16.2
2391 Female, age 94, left hemisphere 15.5
1783 Male, age 74, unknown 14.0
2698 Female, age 72, unknown 13.5
Nucleus basalis of Meynert
nTPM: 15.9
2393 Male, age 80, right hemisphere 20.5
2484 Female, age 94, left hemisphere 15.8
2569 Male, age 61, both hemispheres 15.5
2821 Male, age 75, both hemispheres 11.8
Nucleus of the diagonal band
nTPM: 18.7
2775 Male, age 80, right hemisphere 22.3
2029 Male, age 61, right hemisphere 19.5
2195 Female, age 85, both hemispheres 18.7
1979 Male, age 74, unknown 16.9
1812 Female, age 91, both hemispheres 16.2
Olfactory tubercle
nTPM: 21.2
2856 Male, age 75, right hemisphere 24.2
1846 Male, age 80, right hemisphere 21.6
1998 Female, age 91, both hemispheres 19.6
2487 Female, age 94, left hemisphere 19.5
Putamen
nTPM: 18.9
2647 Male, age 75, left hemisphere 23.0
2482 Female, age 94, left hemisphere 21.8
1838 Male, age 80, right hemisphere 20.3
2489 Female, age 72, unknown 19.0
1937 Female, age 91, right hemisphere 17.7
2466 Female, age 79, unknown 15.7
1829 Male, age 74, unknown 14.8
Septal nuclei
nTPM: 18.5
2059 Female, age 85, both hemispheres 23.3
1960 Male, age 74, unknown 22.1
2629 Female, age 94, right hemisphere 17.5
2009 Female, age 91, both hemispheres 17.4
2031 Female, age 72, unknown 17.4
2199 Male, age 80, right hemisphere 16.3
2394 Male, age 61, left hemisphere 15.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.7
Samples: 246

Max nTPM: 58.5
Min nTPM: 4.0
Std nTPM: 8.9
Median nTPM: 17.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 58.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 52.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 52.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 50.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 48.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 45.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 41.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 41.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 39.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 37.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 37.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.9
Samples: 246

Max nTPM: 117.9
Min nTPM: 4.3
Std nTPM: 12.0
Median nTPM: 19.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 117.9
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 66.2
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 61.7
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 57.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 55.5
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 54.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 53.7
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 50.0
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 46.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 45.7
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 45.6
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Brain - Putamen (basal ganglia)
Average nTPM: 24.7
Samples: 205

Max nTPM: 67.0
Min nTPM: 5.4
Std nTPM: 12.2
Median nTPM: 22.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 67.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 65.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 64.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 60.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 59.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 53.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 53.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 52.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 51.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 51.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 50.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.1
FF:10164-103B2 76 years, female 14.1
Globus pallidus
Scaled Tags Per Million: 3.5
FF:10175-103C4 60 years, female 3.9
FF:10161-103A8 76 years, female 3.0
Nucleus accumbens
Scaled Tags Per Million: 13.7
FF:10037-101F1 23-56 years, mixed 13.7
Putamen
Scaled Tags Per Million: 12.2
FF:10176-103C5 60 years, female 12.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.7
Pig sample Sample description nTPM
Caudate
nTPM: 2.8
Samples: 4

Max nTPM: 3.9
Min nTPM: 1.8
Sample A Female 3.0
Sample B Female 1.8
Sample C Male 3.9
Sample D Male 2.3
Putamen
nTPM: 4.7
Samples: 4

Max nTPM: 9.2
Min nTPM: 2.8
Sample A Female 3.5
Sample B Female 3.3
Sample C Male 9.2
Sample D Male 2.8
Septum
nTPM: 3.8
Samples: 4

Max nTPM: 6.4
Min nTPM: 2.2
Sample A Female 3.3
Sample B Female 3.2
Sample C Male 6.4
Sample D Male 2.2
Ventral pallidum
nTPM: 3.4
Samples: 4

Max nTPM: 5.1
Min nTPM: 1.5
Sample A Female 2.1
Sample B Female 4.9
Sample C Male 5.1
Sample D Male 1.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 20.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.8
Samples: 4

Max nTPM: 24.3
Min nTPM: 18.5
Sample A Male 21.5
Sample B Male 24.3
Sample C Female 18.9
Sample D Female 18.5
Septum
nTPM: 20.4
Samples: 4

Max nTPM: 21.6
Min nTPM: 18.3
Sample A Male 21.6
Sample B Male 21.5
Sample C Female 20.1
Sample D Female 18.3
Ventral forebrain
nTPM: 15.4
Samples: 4

Max nTPM: 18.9
Min nTPM: 13.1
Sample A Male 13.1
Sample B Male 18.9
Sample C Female 15.0
Sample D Female 14.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
74881145 Antisense, RP_060220_01_A03, Mouse strain C57BL/6J (56 days, male) 0.1
643549 Antisense, RP_040914_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
74881145 Antisense, RP_060220_01_A03, Mouse strain C57BL/6J (56 days, male) 0.2
643549 Antisense, RP_040914_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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