BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.0 nTPM
HPA:5.0 nTPM
GTEx:24.3 nTPM
FANTOM5:21.9 Scaled Tags Per Million
Pig:24.3 nTPM
Mouse:43.5 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047369Antibody HPA051484
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
1857 Female, age 85, left hemisphere 4.4
2846 Female, age 79, unknown 2.7
2289 Male, age 61, right hemisphere 2.6
1854 Male, age 80, left hemisphere 1.8
1781 Male, age 74, unknown 1.0
2290 Female, age 72, unknown 0.1
2288 Male, age 75, left hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 5.0
2645 Female, age 72, unknown 13.4
2568 Male, age 61, both hemispheres 6.7
2491 Male, age 75, both hemispheres 6.2
2284 Female, age 91, both hemispheres 4.9
2392 Female, age 94, both hemispheres 4.6
2198 Male, age 80, both hemispheres 3.9
2292 Female, age 85, both hemispheres 3.8
1956 Male, age 74, unknown 1.0
2196 Female, age 79, unknown 0.6
Globus pallidus, externus
nTPM: 2.5
2567 Female, age 72, unknown 5.2
2646 Male, age 61, right hemisphere 4.5
2772 Female, age 79, unknown 1.7
2395 Male, age 75, both hemispheres 1.4
1996 Male, age 80, right hemisphere 0.0
Globus pallidus, internus
nTPM: 1.5
2566 Female, age 72, unknown 3.3
2111 Female, age 85, right hemisphere 2.8
2778 Female, age 91, both hemispheres 1.8
1818 Male, age 74, unknown 1.7
2037 Male, age 80, right hemisphere 0.8
2483 Female, age 94, right hemisphere 0.1
2287 Male, age 75, right hemisphere 0.0
Nucleus accumbens
nTPM: 2.4
2824 Male, age 61, right hemisphere 5.3
2732 Male, age 80, right hemisphere 3.8
1783 Male, age 74, unknown 3.4
1856 Female, age 91, right hemisphere 2.4
1806 Female, age 85, left hemisphere 2.2
2391 Female, age 94, left hemisphere 1.5
2286 Male, age 75, left hemisphere 1.0
2698 Female, age 72, unknown 0.0
Nucleus basalis of Meynert
nTPM: 1.5
2569 Male, age 61, both hemispheres 2.8
2393 Male, age 80, right hemisphere 2.4
2821 Male, age 75, both hemispheres 0.6
2484 Female, age 94, left hemisphere 0.3
Nucleus of the diagonal band
nTPM: 3.7
2195 Female, age 85, both hemispheres 5.4
2029 Male, age 61, right hemisphere 5.3
2775 Male, age 80, right hemisphere 4.3
1979 Male, age 74, unknown 3.0
1812 Female, age 91, both hemispheres 0.4
Olfactory tubercle
nTPM: 4.3
2856 Male, age 75, right hemisphere 6.1
1998 Female, age 91, both hemispheres 5.4
2487 Female, age 94, left hemisphere 3.8
1846 Male, age 80, right hemisphere 2.0
Putamen
nTPM: 2.8
2489 Female, age 72, unknown 4.0
1829 Male, age 74, unknown 3.8
1937 Female, age 91, right hemisphere 3.6
2466 Female, age 79, unknown 3.6
1838 Male, age 80, right hemisphere 3.1
2647 Male, age 75, left hemisphere 1.5
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 3.3
2009 Female, age 91, both hemispheres 4.4
2199 Male, age 80, right hemisphere 4.3
1960 Male, age 74, unknown 4.2
2059 Female, age 85, both hemispheres 4.2
2394 Male, age 61, left hemisphere 3.9
2031 Female, age 72, unknown 1.1
2629 Female, age 94, right hemisphere 0.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.6
Samples: 246

Max nTPM: 38.8
Min nTPM: 13.9
Std nTPM: 4.3
Median nTPM: 22.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 38.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 35.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 33.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 33.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 32.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 32.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 32.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 32.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 31.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 31.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 30.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.3
Samples: 246

Max nTPM: 50.5
Min nTPM: 11.0
Std nTPM: 5.7
Median nTPM: 23.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 50.5
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 42.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 41.1
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 39.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 38.3
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 38.2
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 38.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 35.9
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 35.3
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 34.6
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 34.3
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Brain - Putamen (basal ganglia)
Average nTPM: 21.5
Samples: 205

Max nTPM: 34.5
Min nTPM: 13.9
Std nTPM: 3.7
Median nTPM: 21.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 34.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 32.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 32.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 30.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 29.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 28.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 28.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 28.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 28.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 28.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 27.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.6
FF:10164-103B2 76 years, female 19.6
Globus pallidus
Scaled Tags Per Million: 21.9
FF:10175-103C4 60 years, female 22.1
FF:10161-103A8 76 years, female 21.8
Nucleus accumbens
Scaled Tags Per Million: 15.8
FF:10037-101F1 23-56 years, mixed 15.8
Putamen
Scaled Tags Per Million: 20.4
FF:10176-103C5 60 years, female 20.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.3
Pig sample Sample description nTPM
Caudate
nTPM: 21.7
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.7
Sample A Female 19.7
Sample B Female 23.1
Sample C Male 23.6
Sample D Male 20.3
Putamen
nTPM: 24.3
Samples: 4

Max nTPM: 27.9
Min nTPM: 21.5
Sample A Female 24.1
Sample B Female 21.5
Sample C Male 27.9
Sample D Male 23.8
Septum
nTPM: 22.9
Samples: 4

Max nTPM: 24.3
Min nTPM: 21.4
Sample A Female 24.3
Sample B Female 22.1
Sample C Male 23.7
Sample D Male 21.4
Ventral pallidum
nTPM: 23.8
Samples: 4

Max nTPM: 25.0
Min nTPM: 21.6
Sample A Female 21.6
Sample B Female 24.6
Sample C Male 25.0
Sample D Male 23.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.5
Samples: 4

Max nTPM: 46.2
Min nTPM: 40.8
Sample A Male 45.7
Sample B Male 40.8
Sample C Female 46.2
Sample D Female 41.3
Septum
nTPM: 41.6
Samples: 4

Max nTPM: 44.8
Min nTPM: 37.8
Sample A Male 44.4
Sample B Male 39.3
Sample C Female 37.8
Sample D Female 44.8
Ventral forebrain
nTPM: 38.3
Samples: 4

Max nTPM: 40.3
Min nTPM: 34.2
Sample A Male 39.6
Sample B Male 40.3
Sample C Female 34.2
Sample D Female 39.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
68269038 Antisense, RP_041208_01_F01, Mouse strain C57BL/6J (56 days, male) 1.5
77869146 Antisense, RP_070205_01_A12, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 1.2
68269038 Antisense, RP_041208_01_F01, Mouse strain C57BL/6J (56 days, male) 1.8
77869146 Antisense, RP_070205_01_A12, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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