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R3HDM2
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:20.9 nTPM
HPA:20.9 nTPM
GTEx:18.7 nTPM
FANTOM5:36.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA038327Antibody HPA038328
Glandular cells MediumHigh



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 20.9
overview
Male, age 65
Small intestine sample 232
nTPM: 23.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 22.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 19
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 18

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 18.7
Samples: 187

Max nTPM: 29.0
Min nTPM: 7.4
Std nTPM: 3.7
Median nTPM: 18.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 29.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 28.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 27.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 26.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 26.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 25.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 25.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 25.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 25.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 24.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 24.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 24.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 24.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 24.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 23.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 23.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 23.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 23.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 23.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 23.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 23.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 23.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 22.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 22.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 22.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 22.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 22.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 22.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 22.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 22.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 22.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 22.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 22.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 21.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 21.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 21.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 21.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 21.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 21.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 21.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 21.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 21.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 21.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 21.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 20.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 20.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 20.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 20.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 20.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 20.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 20.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 20.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 20.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 20.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 20.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 20.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 20.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 20.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 20.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 20.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 20.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 20.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 20.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 20.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 20.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 20.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 20.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 19.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 19.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 19.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 19.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 19.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 19.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 19.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 19.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 19.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 19.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 19.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 19.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 19.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 19.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 19.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 19.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 19.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 19.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 19.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 18.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 18.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 18.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 18.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 18.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 18.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 18.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 18.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 18.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 18.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 18.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 18.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 18.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 18.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 18.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 18.5
GTEX-1192X-2526-SM-59868 50-59 years, male 18.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 18.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 18.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 18.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 18.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 18.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 18.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 18.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 18.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 17.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 17.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 17.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 17.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 17.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 17.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 17.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 17.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 17.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 17.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 17.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 17.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 17.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 17.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 17.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 17.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 17.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 16.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 16.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 16.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 16.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 16.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 16.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 16.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 16.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 16.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 16.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 16.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 16.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 16.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 16.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 16.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 16.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 16.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 16.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 16.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 16.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 15.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 15.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 15.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 15.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 15.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 15.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 15.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 15.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 15.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 15.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 15.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 14.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 14.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 14.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 14.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 14.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 14.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 14.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 14.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 14.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 14.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 14.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 13.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 13.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 13.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 13.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 13.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 13.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 13.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 13.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 11.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 11.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 11.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 11.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 10.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 10.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 10.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 7.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 7.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 36.9
FF:10024-101D6 15,40,85 years, mixed 36.9

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