HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.7 nTPM
HPA:62.7 nTPM
GTEx:31.0 nTPM
FANTOM5:230.2 Scaled Tags Per Million
Pig:169.0 nTPM
Mouse:205.2 nTPM
Allen mouse:9.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Hippocampus
nTPM: 8.9
2148 Female, age 91, left hemisphere 21.2
1898 Male, age 80, left hemisphere 11.8
1855 Male, age 76, left hemisphere 9.3
2529 Female, age 94, left hemisphere 7.1
2621 Female, age 67, right hemisphere 4.0
1911 Female, age 85, right hemisphere 0.0
Dentate gyrus
nTPM: 13.1
1927 Female, age 91, both hemispheres 42.8
2531 Female, age 67, both hemispheres 29.9
2246 Female, age 85, both hemispheres 3.3
2010 Male, age 76, both hemispheres 2.7
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 46.6
2613 Female, age 94, left hemisphere 88.5
1938 Female, age 85, left hemisphere 60.1
1787 Male, age 76, left hemisphere 47.3
2764 Male, age 80, right hemisphere 43.1
2686 Male, age 75, right hemisphere 35.5
2117 Female, age 91, right hemisphere 5.2
Hippocampus, CA1
nTPM: 19.1
2045 Male, age 76, both hemispheres 35.9
2749 Male, age 80, left hemisphere 34.0
2527 Male, age 74, both hemispheres 15.9
1873 Female, age 85, both hemispheres 9.9
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 6.3
1892 Male, age 76, both hemispheres 27.5
2113 Female, age 91, right hemisphere 9.7
1963 Male, age 80, left hemisphere 0.6
1940 Female, age 85, left hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 16.9
2620 Female, age 94, left hemisphere 39.6
2861 Female, age 67, both hemispheres 27.6
2137 Male, age 80, left hemisphere 18.0
1867 Male, age 76, both hemispheres 13.0
1891 Female, age 85, both hemispheres 3.3
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 43.2
2250 Female, age 67, right hemisphere 57.4
2622 Female, age 67, right hemisphere 57.2
2693 Female, age 94, both hemispheres 55.0
1990 Female, age 91, right hemisphere 50.1
1850 Male, age 80, both hemispheres 49.9
1933 Female, age 85, both hemispheres 49.7
2245 Female, age 91, both hemispheres 42.4
2692 Male, age 74, both hemispheres 41.0
2532 Female, age 72, left hemisphere 19.5
2018 Male, age 76, both hemispheres 9.9
Perirhinal gyrus
nTPM: 62.7
1847 Female, age 91, left hemisphere 86.7
1841 Female, age 85, right hemisphere 63.9
1794 Male, age 80, right hemisphere 63.0
2848 Male, age 76, right hemisphere 55.8
2521 Female, age 94, right hemisphere 43.9
Subiculum
nTPM: 17.8
1977 Female, age 85, both hemispheres 31.2
2438 Female, age 94, left hemisphere 29.7
2619 Male, age 74, both hemispheres 29.4
2729 Female, age 91, right hemisphere 16.7
1901 Male, age 80, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.0
Samples: 197

Max nTPM: 99.1
Min nTPM: 3.6
Std nTPM: 16.5
Median nTPM: 28.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 99.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 78.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 72.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 71.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 69.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 68.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 66.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 64.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 62.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 61.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 60.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 230.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 230.2
FF:10169-103B7 60 years, female 259.4
FF:10153-102I9 76 years, female 200.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 169.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 111.9
Samples: 4

Max nTPM: 122.1
Min nTPM: 101.9
Sample A Female 122.1
Sample B Female 115.5
Sample C Male 101.9
Sample D Male 108.2
Entorhinal cortex
nTPM: 169.0
Samples: 4

Max nTPM: 174.1
Min nTPM: 166.0
Sample A Female 174.1
Sample B Female 168.5
Sample C Male 166.0
Sample D Male 167.4
Subiculum
nTPM: 147.4
Samples: 4

Max nTPM: 182.8
Min nTPM: 129.1
Sample A Female 182.8
Sample B Female 140.6
Sample C Male 129.1
Sample D Male 137.0
Ventral hippocampus
nTPM: 105.6
Samples: 4

Max nTPM: 118.8
Min nTPM: 95.7
Sample A Female 118.8
Sample B Female 109.4
Sample C Male 98.4
Sample D Male 95.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 205.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 205.2
Samples: 4

Max nTPM: 254.9
Min nTPM: 175.3
Sample A Male 193.8
Sample B Male 196.7
Sample C Female 175.3
Sample D Female 254.9
Hippocampal formation
nTPM: 177.7
Samples: 4

Max nTPM: 202.5
Min nTPM: 150.7
Sample A Male 168.2
Sample B Male 189.5
Sample C Female 202.5
Sample D Female 150.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.3
71211659 Antisense, RP_050816_02_A12, Mouse strain C57BL/6J (56 days, male) 12.9
75988632 Antisense, RP_060620_02_E04, Mouse strain C57BL/6J (56 days, male) 12.8
70301083 Antisense, RP_050309_01_B05, Mouse strain C57BL/6J (56 days, male) 11.9
79760462 Antisense, RP_071204_02_F06, Mouse strain C57BL/6J (56 days, male) 8.8
74357935 Antisense, RP_051219_04_D02, Mouse strain C57BL/6J (56 days, male) 0.0

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