BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.1 nTPM
HPA:22.1 nTPM
GTEx:48.1 nTPM
FANTOM5:312.7 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:256.0 nTPM
Allen mouse:7.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 22.1
2568 Male, age 61, both hemispheres 66.8
2284 Female, age 91, both hemispheres 58.9
2645 Female, age 72, unknown 45.5
2198 Male, age 80, both hemispheres 17.0
2491 Male, age 75, both hemispheres 7.3
1956 Male, age 74, unknown 3.7
2196 Female, age 79, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 10.3
2195 Female, age 85, both hemispheres 36.3
2775 Male, age 80, right hemisphere 8.2
2029 Male, age 61, right hemisphere 5.2
1812 Female, age 91, both hemispheres 2.0
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 19.1
2856 Male, age 75, right hemisphere 40.5
1998 Female, age 91, both hemispheres 34.9
2487 Female, age 94, left hemisphere 1.0
1846 Male, age 80, right hemisphere 0.0
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 8.0
2629 Female, age 94, right hemisphere 29.5
1960 Male, age 74, unknown 27.1
2009 Female, age 91, both hemispheres 0.0
2031 Female, age 72, unknown 0.0
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.4
Samples: 246

Max nTPM: 147.8
Min nTPM: 19.5
Std nTPM: 11.9
Median nTPM: 42.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 147.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 77.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 67.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 66.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 65.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 63.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 62.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 62.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 62.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 61.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 60.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.7
Samples: 246

Max nTPM: 100.5
Min nTPM: 8.2
Std nTPM: 9.3
Median nTPM: 38.2
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 100.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 70.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 70.8
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 63.2
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 59.3
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 57.8
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 57.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 56.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 56.3
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 55.2
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 55.2
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Brain - Putamen (basal ganglia)
Average nTPM: 48.1
Samples: 205

Max nTPM: 77.0
Min nTPM: 21.5
Std nTPM: 9.4
Median nTPM: 48.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 77.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 76.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 70.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 69.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 67.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 67.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 66.1
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 66.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 65.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 64.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 63.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 312.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 104.2
FF:10164-103B2 76 years, female 104.2
Globus pallidus
Scaled Tags Per Million: 142.1
FF:10175-103C4 60 years, female 180.7
FF:10161-103A8 76 years, female 103.5
Nucleus accumbens
Scaled Tags Per Million: 312.7
FF:10037-101F1 23-56 years, mixed 312.7
Putamen
Scaled Tags Per Million: 147.0
FF:10176-103C5 60 years, female 147.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 44.2
Pig sample Sample description nTPM
Caudate
nTPM: 37.6
Samples: 4

Max nTPM: 44.0
Min nTPM: 26.2
Sample A Female 26.2
Sample B Female 44.0
Sample C Male 40.6
Sample D Male 39.7
Putamen
nTPM: 44.2
Samples: 4

Max nTPM: 57.7
Min nTPM: 21.8
Sample A Female 21.8
Sample B Female 42.7
Sample C Male 54.5
Sample D Male 57.7
Septum
nTPM: 31.0
Samples: 4

Max nTPM: 41.6
Min nTPM: 24.8
Sample A Female 24.8
Sample B Female 28.5
Sample C Male 41.6
Sample D Male 29.0
Ventral pallidum
nTPM: 35.3
Samples: 4

Max nTPM: 64.3
Min nTPM: 23.2
Sample A Female 23.2
Sample B Female 28.2
Sample C Male 64.3
Sample D Male 25.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 256.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 256.0
Samples: 4

Max nTPM: 267.4
Min nTPM: 245.8
Sample A Male 245.8
Sample B Male 257.3
Sample C Female 253.6
Sample D Female 267.4
Septum
nTPM: 126.3
Samples: 4

Max nTPM: 141.6
Min nTPM: 112.2
Sample A Male 141.6
Sample B Male 112.2
Sample C Female 120.0
Sample D Female 131.4
Ventral forebrain
nTPM: 175.5
Samples: 4

Max nTPM: 201.4
Min nTPM: 159.1
Sample A Male 174.0
Sample B Male 167.3
Sample C Female 159.1
Sample D Female 201.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.5
656 Antisense, RP_Baylor_103140, Mouse strain C57BL/6J (56 days, male) 6.5
655 Antisense, RP_Baylor_103140, Mouse strain C57BL/6J (56 days, male) 4.4
Pallidum
Expression energy: 7.2
656 Antisense, RP_Baylor_103140, Mouse strain C57BL/6J (56 days, male) 7.2
655 Antisense, RP_Baylor_103140, Mouse strain C57BL/6J (56 days, male) 6.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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