MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1275.8 nTPM
HPA:1275.8 nTPM
GTEx:1583.4 nTPM
FANTOM5:860.7 Scaled Tags Per Million
Pig:169.8 nTPM
Mouse:58.4 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1275.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1127.1
2666 Male, age 74, left hemisphere 1307.1
2586 Male, age 75, left hemisphere 1226.6
1830 Male, age 51, unknown 1204.4
1833 Male, age 53, unknown 1169.7
2411 Female, age 72, unknown 1156.9
2019 Male, age 18, unknown 1113.7
1870 Female, age 42, unknown 1092.0
2828 Female, age 72, unknown 1078.2
1827 Male, age 72, unknown 992.4
2219 Male, age 76, both hemispheres 929.7
Dorsal raphe nucleus
nTPM: 957.0
2750 Male, age 76, both hemispheres 1121.9
2016 Female, age 72, unknown 1022.2
1828 Male, age 53, unknown 950.1
2047 Male, age 72, unknown 878.5
2298 Female, age 72, unknown 812.1
Inferior colliculus
nTPM: 941.8
1848 Female, age 42, unknown 978.7
1890 Male, age 53, unknown 973.9
2849 Male, age 72, unknown 940.2
2097 Female, age 72, unknown 874.5
Median raphe nucleus
nTPM: 889.8
2220 Male, age 76, midline 889.8
Pedunculopontine tegmental nucleus
nTPM: 1021.8
2334 Male, age 80, both hemispheres 1083.0
2338 Male, age 61, both hemispheres 1029.5
1921 Female, age 85, both hemispheres 952.8
Periaquaductal grey, anterior
nTPM: 939.1
2502 Female, age 75, unknown 984.4
1947 Male, age 18, unknown 952.5
1795 Male, age 51, unknown 880.5
Periaquaductal grey, dorsal
nTPM: 884.6
2464 Female, age 72, unknown 997.0
1831 Male, age 72, unknown 928.5
1840 Male, age 53, unknown 827.9
2850 Male, age 76, both hemispheres 785.0
Periaquaductal grey, lateral
nTPM: 862.5
2053 Male, age 18, unknown 936.0
2272 Male, age 74, both hemispheres 873.4
2140 Male, age 76, both hemispheres 778.2
Pretectal area
nTPM: 951.0
1815 Male, age 53, unknown 1068.9
2407 Male, age 75, both hemispheres 1050.7
2007 Male, age 72, unknown 1001.9
1817 Female, age 42, unknown 1000.3
2316 Male, age 76, right hemisphere 993.6
2825 Male, age 18, unknown 952.2
1944 Female, age 72, unknown 920.5
1816 Male, age 51, unknown 905.9
2273 Male, age 74, both hemispheres 861.2
2667 Female, age 75, unknown 860.3
2224 Female, age 72, unknown 845.9
Red nucleus
nTPM: 1275.8
2588 Male, age 74, left hemisphere 1491.0
2503 Female, age 72, unknown 1421.8
1904 Male, age 53, unknown 1332.3
1865 Male, age 51, unknown 1320.8
1821 Female, age 72, unknown 1264.0
2227 Male, age 72, unknown 1245.5
2769 Male, age 72, unknown 1245.3
2823 Male, age 76, right hemisphere 1223.2
1954 Female, age 42, unknown 1220.6
2785 Male, age 18, unknown 1203.2
2725 Female, age 75, unknown 1172.1
2584 Male, age 75, left hemisphere 1170.4
Substantia nigra
nTPM: 1046.2
2590 Female, age 75, unknown 1133.0
2665 Male, age 74, both hemispheres 1130.3
2583 Male, age 75, right hemisphere 1115.2
2409 Female, age 72, unknown 1090.4
1851 Male, age 51, unknown 1062.6
1889 Female, age 72, unknown 1029.6
2699 Male, age 18, unknown 1017.8
2241 Male, age 72, unknown 1007.4
1941 Male, age 53, unknown 953.5
1916 Female, age 42, unknown 922.4
Superior colliculus
nTPM: 1048.9
1995 Male, age 72, unknown 1162.1
2587 Male, age 74, left hemisphere 1140.6
1913 Female, age 42, unknown 1109.3
2668 Female, age 75, unknown 1093.4
1839 Male, age 51, unknown 1070.4
2664 Male, age 75, both hemispheres 1059.4
1895 Male, age 76, right hemisphere 1003.7
1796 Male, age 53, unknown 956.6
2261 Male, age 18, unknown 949.5
2087 Female, age 72, unknown 943.8
Ventral tegmental area
nTPM: 1019.5
2223 Female, age 72, unknown 1133.3
2410 Female, age 72, unknown 1107.2
2021 Male, age 53, unknown 1002.2
1942 Male, age 51, unknown 996.7
1915 Female, age 42, unknown 961.7
2218 Male, age 76, both hemispheres 916.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1583.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1583.4
Samples: 139

Max nTPM: 5085.8
Min nTPM: 317.6
Std nTPM: 892.3
Median nTPM: 1347.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 5085.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 4178.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 3689.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 3544.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 3367.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3329.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 3316.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 3312.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3234.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 3232.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 3189.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 860.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 860.7
FF:10158-103A5 76 years, female 860.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 169.8
Pig sample Sample description nTPM
Midbrain
nTPM: 169.8
Samples: 4

Max nTPM: 242.0
Min nTPM: 119.5
Sample A Female 242.0
Sample B Female 192.9
Sample C Male 124.7
Sample D Male 119.5
Periaqueductal gray
nTPM: 132.4
Samples: 3

Max nTPM: 157.9
Min nTPM: 116.5
Sample B Female 157.9
Sample C Male 116.5
Sample D Male 122.9
Substantia nigra
nTPM: 156.6
Samples: 4

Max nTPM: 185.1
Min nTPM: 121.3
Sample A Female 176.1
Sample B Female 121.3
Sample C Male 143.7
Sample D Male 185.1
Superior colliculi
nTPM: 132.6
Samples: 4

Max nTPM: 152.3
Min nTPM: 81.3
Sample A Female 147.5
Sample B Female 81.3
Sample C Male 149.2
Sample D Male 152.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.4
Samples: 4

Max nTPM: 59.2
Min nTPM: 57.6
Sample A Male 59.2
Sample B Male 58.5
Sample C Female 58.4
Sample D Female 57.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68845502 Antisense, RP_050224_01_H07, Mouse strain C57BL/6J (56 days, male) 1.2
71587888 Antisense, RP_050725_03_G01, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.