MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.3 nTPM
HPA:41.3 nTPM
GTEx:30.7 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:43.6 nTPM
Mouse:74.5 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.9
2219 Male, age 76, both hemispheres 33.7
1827 Male, age 72, unknown 32.8
1833 Male, age 53, unknown 31.1
2586 Male, age 75, left hemisphere 29.9
2666 Male, age 74, left hemisphere 29.0
1870 Female, age 42, unknown 28.9
2828 Female, age 72, unknown 28.8
2411 Female, age 72, unknown 28.1
1830 Male, age 51, unknown 27.8
2019 Male, age 18, unknown 18.8
Dorsal raphe nucleus
nTPM: 34.4
2047 Male, age 72, unknown 40.7
1828 Male, age 53, unknown 34.2
2298 Female, age 72, unknown 33.4
2016 Female, age 72, unknown 31.9
2750 Male, age 76, both hemispheres 31.6
Inferior colliculus
nTPM: 31.7
2097 Female, age 72, unknown 33.2
2849 Male, age 72, unknown 31.8
1890 Male, age 53, unknown 31.2
1848 Female, age 42, unknown 30.7
Median raphe nucleus
nTPM: 41.3
2220 Male, age 76, midline 41.3
Pedunculopontine tegmental nucleus
nTPM: 32.0
2334 Male, age 80, both hemispheres 33.6
2338 Male, age 61, both hemispheres 31.3
1921 Female, age 85, both hemispheres 31.2
Periaquaductal grey, anterior
nTPM: 35.4
1947 Male, age 18, unknown 43.5
2502 Female, age 75, unknown 31.8
1795 Male, age 51, unknown 31.0
Periaquaductal grey, dorsal
nTPM: 35.7
1840 Male, age 53, unknown 39.8
2850 Male, age 76, both hemispheres 37.5
1831 Male, age 72, unknown 34.3
2464 Female, age 72, unknown 31.2
Periaquaductal grey, lateral
nTPM: 31.4
2140 Male, age 76, both hemispheres 37.2
2053 Male, age 18, unknown 32.1
2272 Male, age 74, both hemispheres 24.9
Pretectal area
nTPM: 29.9
2825 Male, age 18, unknown 37.4
2667 Female, age 75, unknown 34.2
2224 Female, age 72, unknown 33.7
1816 Male, age 51, unknown 31.7
2407 Male, age 75, both hemispheres 31.7
1944 Female, age 72, unknown 31.3
2316 Male, age 76, right hemisphere 30.5
2273 Male, age 74, both hemispheres 28.1
1815 Male, age 53, unknown 25.1
2007 Male, age 72, unknown 22.9
1817 Female, age 42, unknown 22.7
Red nucleus
nTPM: 25.6
2584 Male, age 75, left hemisphere 32.5
2725 Female, age 75, unknown 30.7
2588 Male, age 74, left hemisphere 28.6
2823 Male, age 76, right hemisphere 27.6
2503 Female, age 72, unknown 26.6
1954 Female, age 42, unknown 26.2
1904 Male, age 53, unknown 24.0
2769 Male, age 72, unknown 23.9
2227 Male, age 72, unknown 23.6
1821 Female, age 72, unknown 22.5
1865 Male, age 51, unknown 22.5
2785 Male, age 18, unknown 18.6
Substantia nigra
nTPM: 32.8
2241 Male, age 72, unknown 42.5
1916 Female, age 42, unknown 38.7
1851 Male, age 51, unknown 36.6
2409 Female, age 72, unknown 35.5
2699 Male, age 18, unknown 32.0
1941 Male, age 53, unknown 30.0
2583 Male, age 75, right hemisphere 29.6
2665 Male, age 74, both hemispheres 28.8
2590 Female, age 75, unknown 27.4
1889 Female, age 72, unknown 26.8
Superior colliculus
nTPM: 28.6
2664 Male, age 75, both hemispheres 34.8
2261 Male, age 18, unknown 33.5
2087 Female, age 72, unknown 30.6
1895 Male, age 76, right hemisphere 30.3
1796 Male, age 53, unknown 30.1
1839 Male, age 51, unknown 27.7
2668 Female, age 75, unknown 27.0
2587 Male, age 74, left hemisphere 25.2
1913 Female, age 42, unknown 23.4
1995 Male, age 72, unknown 23.0
Ventral tegmental area
nTPM: 33.4
1942 Male, age 51, unknown 37.0
2021 Male, age 53, unknown 35.3
2218 Male, age 76, both hemispheres 34.9
1915 Female, age 42, unknown 34.0
2410 Female, age 72, unknown 30.4
2223 Female, age 72, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.7
Samples: 139

Max nTPM: 61.1
Min nTPM: 12.6
Std nTPM: 9.0
Median nTPM: 28.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 54.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 54.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 51.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 49.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 48.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 48.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 48.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 46.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 45.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.7
FF:10158-103A5 76 years, female 32.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.6
Pig sample Sample description nTPM
Midbrain
nTPM: 43.1
Samples: 4

Max nTPM: 52.8
Min nTPM: 35.4
Sample A Female 52.8
Sample B Female 48.5
Sample C Male 35.4
Sample D Male 35.6
Periaqueductal gray
nTPM: 40.6
Samples: 3

Max nTPM: 43.4
Min nTPM: 37.8
Sample B Female 40.6
Sample C Male 43.4
Sample D Male 37.8
Substantia nigra
nTPM: 43.6
Samples: 4

Max nTPM: 55.0
Min nTPM: 35.7
Sample A Female 55.0
Sample B Female 39.0
Sample C Male 44.7
Sample D Male 35.7
Superior colliculi
nTPM: 36.9
Samples: 4

Max nTPM: 45.6
Min nTPM: 31.8
Sample A Female 45.6
Sample B Female 31.8
Sample C Male 33.3
Sample D Male 37.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 75.7
Min nTPM: 72.6
Sample A Male 75.4
Sample B Male 74.1
Sample C Female 72.6
Sample D Female 75.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
513474 Antisense, RP_040810_01_G04, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.