MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:142.3 nTPM
HPA:142.3 nTPM
GTEx:189.0 nTPM
FANTOM5:345.3 Scaled Tags Per Million
Pig:166.0 nTPM
Mouse:126.5 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 142.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.1
2411 Female, age 72, unknown 149.4
1870 Female, age 42, unknown 143.5
2019 Male, age 18, unknown 137.3
2219 Male, age 76, both hemispheres 133.8
1833 Male, age 53, unknown 131.1
1830 Male, age 51, unknown 128.0
1827 Male, age 72, unknown 123.6
2828 Female, age 72, unknown 121.2
2666 Male, age 74, left hemisphere 116.8
2586 Male, age 75, left hemisphere 106.6
Dorsal raphe nucleus
nTPM: 135.8
2750 Male, age 76, both hemispheres 144.9
2298 Female, age 72, unknown 140.2
1828 Male, age 53, unknown 135.3
2047 Male, age 72, unknown 133.5
2016 Female, age 72, unknown 124.9
Inferior colliculus
nTPM: 129.3
2097 Female, age 72, unknown 134.8
1848 Female, age 42, unknown 131.3
1890 Male, age 53, unknown 128.9
2849 Male, age 72, unknown 122.2
Median raphe nucleus
nTPM: 137.7
2220 Male, age 76, midline 137.7
Pedunculopontine tegmental nucleus
nTPM: 142.3
2334 Male, age 80, both hemispheres 150.1
1921 Female, age 85, both hemispheres 140.6
2338 Male, age 61, both hemispheres 136.1
Periaquaductal grey, anterior
nTPM: 127.3
1947 Male, age 18, unknown 133.0
2502 Female, age 75, unknown 129.2
1795 Male, age 51, unknown 119.7
Periaquaductal grey, dorsal
nTPM: 121.5
2464 Female, age 72, unknown 125.0
1840 Male, age 53, unknown 123.0
2850 Male, age 76, both hemispheres 122.2
1831 Male, age 72, unknown 115.8
Periaquaductal grey, lateral
nTPM: 120.1
2272 Male, age 74, both hemispheres 127.2
2053 Male, age 18, unknown 117.9
2140 Male, age 76, both hemispheres 115.2
Pretectal area
nTPM: 129.3
2667 Female, age 75, unknown 151.9
1817 Female, age 42, unknown 136.3
2007 Male, age 72, unknown 134.3
2224 Female, age 72, unknown 132.7
2273 Male, age 74, both hemispheres 129.5
1944 Female, age 72, unknown 127.7
2316 Male, age 76, right hemisphere 126.9
1816 Male, age 51, unknown 125.4
1815 Male, age 53, unknown 124.6
2825 Male, age 18, unknown 120.4
2407 Male, age 75, both hemispheres 112.9
Red nucleus
nTPM: 136.0
1821 Female, age 72, unknown 164.7
1954 Female, age 42, unknown 150.1
1865 Male, age 51, unknown 141.7
1904 Male, age 53, unknown 139.5
2227 Male, age 72, unknown 138.2
2769 Male, age 72, unknown 137.1
2785 Male, age 18, unknown 136.4
2823 Male, age 76, right hemisphere 135.3
2503 Female, age 72, unknown 133.7
2725 Female, age 75, unknown 122.7
2588 Male, age 74, left hemisphere 121.9
2584 Male, age 75, left hemisphere 110.3
Substantia nigra
nTPM: 137.5
2241 Male, age 72, unknown 160.1
1916 Female, age 42, unknown 157.4
1851 Male, age 51, unknown 145.2
2409 Female, age 72, unknown 142.8
1941 Male, age 53, unknown 141.0
1889 Female, age 72, unknown 140.4
2699 Male, age 18, unknown 132.0
2590 Female, age 75, unknown 123.3
2665 Male, age 74, both hemispheres 117.8
2583 Male, age 75, right hemisphere 115.0
Superior colliculus
nTPM: 123.1
2587 Male, age 74, left hemisphere 135.9
1895 Male, age 76, right hemisphere 134.2
1839 Male, age 51, unknown 125.6
1913 Female, age 42, unknown 124.7
2668 Female, age 75, unknown 124.0
2087 Female, age 72, unknown 122.5
1796 Male, age 53, unknown 122.4
2261 Male, age 18, unknown 119.5
1995 Male, age 72, unknown 115.2
2664 Male, age 75, both hemispheres 106.8
Ventral tegmental area
nTPM: 139.8
2410 Female, age 72, unknown 152.0
1915 Female, age 42, unknown 146.5
2218 Male, age 76, both hemispheres 145.9
2223 Female, age 72, unknown 137.9
1942 Male, age 51, unknown 130.4
2021 Male, age 53, unknown 126.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 189.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 189.0
Samples: 139

Max nTPM: 465.5
Min nTPM: 100.4
Std nTPM: 55.8
Median nTPM: 179.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 465.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 419.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 346.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 315.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 306.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 297.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 296.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 285.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 276.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 267.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 255.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 345.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 345.3
FF:10158-103A5 76 years, female 345.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 166.0
Pig sample Sample description nTPM
Midbrain
nTPM: 166.0
Samples: 4

Max nTPM: 289.0
Min nTPM: 99.6
Sample A Female 289.0
Sample B Female 148.8
Sample C Male 99.6
Sample D Male 126.4
Periaqueductal gray
nTPM: 107.3
Samples: 3

Max nTPM: 127.8
Min nTPM: 95.3
Sample B Female 127.8
Sample C Male 98.7
Sample D Male 95.3
Substantia nigra
nTPM: 131.4
Samples: 4

Max nTPM: 201.9
Min nTPM: 91.1
Sample A Female 201.9
Sample B Female 91.1
Sample C Male 108.3
Sample D Male 124.1
Superior colliculi
nTPM: 148.3
Samples: 4

Max nTPM: 209.3
Min nTPM: 101.0
Sample A Female 209.3
Sample B Female 101.0
Sample C Male 136.0
Sample D Male 146.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 126.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.5
Samples: 4

Max nTPM: 130.2
Min nTPM: 123.2
Sample A Male 125.3
Sample B Male 127.3
Sample C Female 123.2
Sample D Female 130.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
74635292 Antisense, RP_060215_03_F04, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.