MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:156.3 nTPM
HPA:156.3 nTPM
GTEx:167.7 nTPM
FANTOM5:148.1 Scaled Tags Per Million
Pig:70.8 nTPM
Mouse:73.9 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 156.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.5
1870 Female, age 42, unknown 153.5
2411 Female, age 72, unknown 153.4
2586 Male, age 75, left hemisphere 152.9
2828 Female, age 72, unknown 151.9
1833 Male, age 53, unknown 148.0
2019 Male, age 18, unknown 147.6
1827 Male, age 72, unknown 146.6
1830 Male, age 51, unknown 146.1
2219 Male, age 76, both hemispheres 143.1
2666 Male, age 74, left hemisphere 141.9
Dorsal raphe nucleus
nTPM: 153.3
2298 Female, age 72, unknown 163.3
2750 Male, age 76, both hemispheres 151.8
2016 Female, age 72, unknown 150.9
1828 Male, age 53, unknown 150.5
2047 Male, age 72, unknown 149.8
Inferior colliculus
nTPM: 146.2
2097 Female, age 72, unknown 152.2
1890 Male, age 53, unknown 145.9
1848 Female, age 42, unknown 143.5
2849 Male, age 72, unknown 143.2
Median raphe nucleus
nTPM: 150.4
2220 Male, age 76, midline 150.4
Pedunculopontine tegmental nucleus
nTPM: 152.3
2338 Male, age 61, both hemispheres 158.5
2334 Male, age 80, both hemispheres 152.8
1921 Female, age 85, both hemispheres 145.7
Periaquaductal grey, anterior
nTPM: 156.3
1947 Male, age 18, unknown 159.6
1795 Male, age 51, unknown 155.5
2502 Female, age 75, unknown 153.8
Periaquaductal grey, dorsal
nTPM: 147.8
1840 Male, age 53, unknown 151.7
2850 Male, age 76, both hemispheres 147.9
1831 Male, age 72, unknown 146.2
2464 Female, age 72, unknown 145.2
Periaquaductal grey, lateral
nTPM: 150.7
2272 Male, age 74, both hemispheres 156.5
2053 Male, age 18, unknown 149.1
2140 Male, age 76, both hemispheres 146.3
Pretectal area
nTPM: 151.1
2273 Male, age 74, both hemispheres 161.4
2224 Female, age 72, unknown 157.0
1817 Female, age 42, unknown 153.1
2667 Female, age 75, unknown 151.8
2007 Male, age 72, unknown 151.3
1815 Male, age 53, unknown 150.9
2825 Male, age 18, unknown 149.5
1816 Male, age 51, unknown 148.8
2407 Male, age 75, both hemispheres 148.3
1944 Female, age 72, unknown 146.4
2316 Male, age 76, right hemisphere 143.5
Red nucleus
nTPM: 149.3
2503 Female, age 72, unknown 153.7
1865 Male, age 51, unknown 153.1
2725 Female, age 75, unknown 152.8
2769 Male, age 72, unknown 151.4
2227 Male, age 72, unknown 151.3
1821 Female, age 72, unknown 150.7
1904 Male, age 53, unknown 150.5
1954 Female, age 42, unknown 149.5
2785 Male, age 18, unknown 148.2
2823 Male, age 76, right hemisphere 146.0
2584 Male, age 75, left hemisphere 145.0
2588 Male, age 74, left hemisphere 139.9
Substantia nigra
nTPM: 150.0
1916 Female, age 42, unknown 158.8
1851 Male, age 51, unknown 156.9
2409 Female, age 72, unknown 153.0
2241 Male, age 72, unknown 150.7
2583 Male, age 75, right hemisphere 148.3
2699 Male, age 18, unknown 148.2
1889 Female, age 72, unknown 148.0
2590 Female, age 75, unknown 147.3
2665 Male, age 74, both hemispheres 146.0
1941 Male, age 53, unknown 143.0
Superior colliculus
nTPM: 149.2
2587 Male, age 74, left hemisphere 154.5
1995 Male, age 72, unknown 152.9
1913 Female, age 42, unknown 152.7
1796 Male, age 53, unknown 152.0
2261 Male, age 18, unknown 152.0
2668 Female, age 75, unknown 149.1
2087 Female, age 72, unknown 147.3
2664 Male, age 75, both hemispheres 146.2
1839 Male, age 51, unknown 143.2
1895 Male, age 76, right hemisphere 142.2
Ventral tegmental area
nTPM: 153.3
1915 Female, age 42, unknown 155.6
2021 Male, age 53, unknown 155.1
2410 Female, age 72, unknown 155.0
1942 Male, age 51, unknown 154.2
2223 Female, age 72, unknown 150.7
2218 Male, age 76, both hemispheres 149.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 167.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 167.7
Samples: 139

Max nTPM: 403.5
Min nTPM: 80.6
Std nTPM: 52.4
Median nTPM: 152.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 403.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 382.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 305.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 290.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 284.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 280.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 270.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 262.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 258.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 257.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 253.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.1
FF:10158-103A5 76 years, female 148.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.8
Pig sample Sample description nTPM
Midbrain
nTPM: 67.2
Samples: 4

Max nTPM: 110.7
Min nTPM: 38.4
Sample A Female 110.7
Sample B Female 64.5
Sample C Male 55.1
Sample D Male 38.4
Periaqueductal gray
nTPM: 46.7
Samples: 3

Max nTPM: 49.6
Min nTPM: 44.1
Sample B Female 46.3
Sample C Male 49.6
Sample D Male 44.1
Substantia nigra
nTPM: 70.8
Samples: 4

Max nTPM: 94.3
Min nTPM: 56.0
Sample A Female 94.3
Sample B Female 73.1
Sample C Male 59.6
Sample D Male 56.0
Superior colliculi
nTPM: 68.3
Samples: 4

Max nTPM: 85.9
Min nTPM: 50.3
Sample A Female 81.0
Sample B Female 85.9
Sample C Male 55.8
Sample D Male 50.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 73.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.9
Samples: 4

Max nTPM: 79.3
Min nTPM: 69.1
Sample A Male 76.3
Sample B Male 70.7
Sample C Female 69.1
Sample D Female 79.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69885768 Antisense, RP_050512_03_D07, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.