MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA:27.5 nTPM
GTEx:26.6 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Pig:40.1 nTPM
Mouse:7.9 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.4
2586 Male, age 75, left hemisphere 30.0
1830 Male, age 51, unknown 28.3
2411 Female, age 72, unknown 27.1
1833 Male, age 53, unknown 26.6
2828 Female, age 72, unknown 25.6
1870 Female, age 42, unknown 24.9
2019 Male, age 18, unknown 23.5
2219 Male, age 76, both hemispheres 23.5
2666 Male, age 74, left hemisphere 22.8
1827 Male, age 72, unknown 21.9
Dorsal raphe nucleus
nTPM: 21.0
2750 Male, age 76, both hemispheres 24.4
2016 Female, age 72, unknown 21.6
2047 Male, age 72, unknown 20.8
1828 Male, age 53, unknown 20.6
2298 Female, age 72, unknown 17.9
Inferior colliculus
nTPM: 19.4
1890 Male, age 53, unknown 22.1
1848 Female, age 42, unknown 19.8
2849 Male, age 72, unknown 19.8
2097 Female, age 72, unknown 15.9
Median raphe nucleus
nTPM: 19.5
2220 Male, age 76, midline 19.5
Pedunculopontine tegmental nucleus
nTPM: 20.7
1921 Female, age 85, both hemispheres 21.0
2338 Male, age 61, both hemispheres 20.6
2334 Male, age 80, both hemispheres 20.4
Periaquaductal grey, anterior
nTPM: 23.6
2502 Female, age 75, unknown 26.0
1947 Male, age 18, unknown 24.5
1795 Male, age 51, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 19.2
2464 Female, age 72, unknown 21.2
2850 Male, age 76, both hemispheres 19.6
1831 Male, age 72, unknown 18.9
1840 Male, age 53, unknown 17.2
Periaquaductal grey, lateral
nTPM: 21.6
2053 Male, age 18, unknown 22.6
2140 Male, age 76, both hemispheres 21.3
2272 Male, age 74, both hemispheres 20.8
Pretectal area
nTPM: 19.4
2407 Male, age 75, both hemispheres 23.0
2825 Male, age 18, unknown 22.4
1815 Male, age 53, unknown 21.8
2007 Male, age 72, unknown 20.7
2316 Male, age 76, right hemisphere 19.7
2273 Male, age 74, both hemispheres 19.6
2667 Female, age 75, unknown 18.3
2224 Female, age 72, unknown 18.2
1817 Female, age 42, unknown 18.1
1944 Female, age 72, unknown 16.4
1816 Male, age 51, unknown 15.4
Red nucleus
nTPM: 27.5
1904 Male, age 53, unknown 32.6
1865 Male, age 51, unknown 31.6
2769 Male, age 72, unknown 30.4
2588 Male, age 74, left hemisphere 29.9
2227 Male, age 72, unknown 27.7
2503 Female, age 72, unknown 27.7
1821 Female, age 72, unknown 26.9
2823 Male, age 76, right hemisphere 26.8
2785 Male, age 18, unknown 25.4
1954 Female, age 42, unknown 25.0
2584 Male, age 75, left hemisphere 24.9
2725 Female, age 75, unknown 21.6
Substantia nigra
nTPM: 23.1
2409 Female, age 72, unknown 27.8
2583 Male, age 75, right hemisphere 26.2
1851 Male, age 51, unknown 25.8
2699 Male, age 18, unknown 25.2
2590 Female, age 75, unknown 23.1
2665 Male, age 74, both hemispheres 23.1
1916 Female, age 42, unknown 22.7
1941 Male, age 53, unknown 19.7
1889 Female, age 72, unknown 19.4
2241 Male, age 72, unknown 18.3
Superior colliculus
nTPM: 23.2
1913 Female, age 42, unknown 29.4
1995 Male, age 72, unknown 27.3
2668 Female, age 75, unknown 27.3
2664 Male, age 75, both hemispheres 24.0
1895 Male, age 76, right hemisphere 23.6
1839 Male, age 51, unknown 22.7
2587 Male, age 74, left hemisphere 21.4
1796 Male, age 53, unknown 19.5
2261 Male, age 18, unknown 19.0
2087 Female, age 72, unknown 17.7
Ventral tegmental area
nTPM: 23.2
2410 Female, age 72, unknown 24.9
2223 Female, age 72, unknown 24.5
1942 Male, age 51, unknown 23.3
2218 Male, age 76, both hemispheres 22.9
2021 Male, age 53, unknown 22.0
1915 Female, age 42, unknown 21.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.6
Samples: 139

Max nTPM: 58.1
Min nTPM: 9.1
Std nTPM: 7.0
Median nTPM: 26.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 46.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 41.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 39.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 39.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 38.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 38.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 38.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 37.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 36.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.3
FF:10158-103A5 76 years, female 47.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.1
Pig sample Sample description nTPM
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 60.4
Min nTPM: 29.0
Sample A Female 60.4
Sample B Female 36.6
Sample C Male 34.4
Sample D Male 29.0
Periaqueductal gray
nTPM: 32.8
Samples: 3

Max nTPM: 34.3
Min nTPM: 30.9
Sample B Female 34.3
Sample C Male 33.2
Sample D Male 30.9
Substantia nigra
nTPM: 37.4
Samples: 4

Max nTPM: 43.2
Min nTPM: 27.4
Sample A Female 43.2
Sample B Female 27.4
Sample C Male 38.4
Sample D Male 40.5
Superior colliculi
nTPM: 32.5
Samples: 4

Max nTPM: 41.4
Min nTPM: 21.5
Sample A Female 41.4
Sample B Female 21.5
Sample C Male 31.7
Sample D Male 35.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.8
Sample A Male 9.3
Sample B Male 7.4
Sample C Female 6.8
Sample D Female 8.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
532736 Antisense, RP_040825_01_H10, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.