MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.2 nTPM
HPA:86.2 nTPM
GTEx:56.2 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:24.5 nTPM
Mouse:12.2 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.0
2019 Male, age 18, unknown 85.1
2828 Female, age 72, unknown 83.8
1870 Female, age 42, unknown 82.7
2411 Female, age 72, unknown 82.2
1833 Male, age 53, unknown 81.3
1827 Male, age 72, unknown 80.9
1830 Male, age 51, unknown 80.7
2666 Male, age 74, left hemisphere 79.4
2586 Male, age 75, left hemisphere 78.3
2219 Male, age 76, both hemispheres 76.1
Dorsal raphe nucleus
nTPM: 83.6
2298 Female, age 72, unknown 85.0
1828 Male, age 53, unknown 84.6
2750 Male, age 76, both hemispheres 83.5
2047 Male, age 72, unknown 83.2
2016 Female, age 72, unknown 81.8
Inferior colliculus
nTPM: 83.1
2097 Female, age 72, unknown 88.0
1890 Male, age 53, unknown 85.6
1848 Female, age 42, unknown 81.3
2849 Male, age 72, unknown 77.6
Median raphe nucleus
nTPM: 80.0
2220 Male, age 76, midline 80.0
Pedunculopontine tegmental nucleus
nTPM: 84.5
2338 Male, age 61, both hemispheres 90.0
2334 Male, age 80, both hemispheres 83.8
1921 Female, age 85, both hemispheres 79.6
Periaquaductal grey, anterior
nTPM: 81.6
1795 Male, age 51, unknown 83.8
1947 Male, age 18, unknown 83.8
2502 Female, age 75, unknown 77.0
Periaquaductal grey, dorsal
nTPM: 82.4
1831 Male, age 72, unknown 85.0
2850 Male, age 76, both hemispheres 82.9
2464 Female, age 72, unknown 81.5
1840 Male, age 53, unknown 80.0
Periaquaductal grey, lateral
nTPM: 85.8
2272 Male, age 74, both hemispheres 92.3
2053 Male, age 18, unknown 82.7
2140 Male, age 76, both hemispheres 82.4
Pretectal area
nTPM: 84.1
2273 Male, age 74, both hemispheres 95.8
1817 Female, age 42, unknown 89.5
2667 Female, age 75, unknown 85.2
1944 Female, age 72, unknown 84.5
1816 Male, age 51, unknown 84.3
2224 Female, age 72, unknown 83.7
1815 Male, age 53, unknown 83.1
2007 Male, age 72, unknown 83.0
2825 Male, age 18, unknown 80.4
2316 Male, age 76, right hemisphere 78.0
2407 Male, age 75, both hemispheres 77.8
Red nucleus
nTPM: 86.0
1821 Female, age 72, unknown 90.2
1954 Female, age 42, unknown 88.9
2725 Female, age 75, unknown 88.6
2503 Female, age 72, unknown 87.8
2823 Male, age 76, right hemisphere 87.4
1904 Male, age 53, unknown 86.9
1865 Male, age 51, unknown 86.6
2769 Male, age 72, unknown 86.4
2227 Male, age 72, unknown 86.1
2785 Male, age 18, unknown 84.6
2588 Male, age 74, left hemisphere 82.3
2584 Male, age 75, left hemisphere 76.4
Substantia nigra
nTPM: 86.2
1851 Male, age 51, unknown 89.2
2409 Female, age 72, unknown 89.2
1916 Female, age 42, unknown 88.4
1889 Female, age 72, unknown 87.7
2241 Male, age 72, unknown 86.7
1941 Male, age 53, unknown 85.5
2590 Female, age 75, unknown 85.5
2583 Male, age 75, right hemisphere 83.5
2665 Male, age 74, both hemispheres 83.2
2699 Male, age 18, unknown 83.2
Superior colliculus
nTPM: 82.7
2587 Male, age 74, left hemisphere 86.0
1995 Male, age 72, unknown 85.2
2087 Female, age 72, unknown 84.8
2261 Male, age 18, unknown 84.6
2668 Female, age 75, unknown 84.4
1796 Male, age 53, unknown 82.6
1913 Female, age 42, unknown 82.5
1839 Male, age 51, unknown 80.1
1895 Male, age 76, right hemisphere 79.8
2664 Male, age 75, both hemispheres 76.8
Ventral tegmental area
nTPM: 84.5
2223 Female, age 72, unknown 90.8
1915 Female, age 42, unknown 86.8
2410 Female, age 72, unknown 86.5
2021 Male, age 53, unknown 82.0
2218 Male, age 76, both hemispheres 80.9
1942 Male, age 51, unknown 80.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.2
Samples: 139

Max nTPM: 307.6
Min nTPM: 22.0
Std nTPM: 31.0
Median nTPM: 48.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 307.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 131.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 130.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 118.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 116.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 111.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 109.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 107.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 105.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 97.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 93.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.0
FF:10158-103A5 76 years, female 34.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.5
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 27.9
Min nTPM: 16.2
Sample A Female 27.8
Sample B Female 27.9
Sample C Male 17.1
Sample D Male 16.2
Periaqueductal gray
nTPM: 21.1
Samples: 3

Max nTPM: 26.0
Min nTPM: 16.0
Sample B Female 26.0
Sample C Male 21.3
Sample D Male 16.0
Substantia nigra
nTPM: 19.8
Samples: 4

Max nTPM: 26.7
Min nTPM: 15.2
Sample A Female 26.7
Sample B Female 19.6
Sample C Male 17.7
Sample D Male 15.2
Superior colliculi
nTPM: 24.5
Samples: 4

Max nTPM: 31.3
Min nTPM: 19.4
Sample A Female 31.3
Sample B Female 21.6
Sample C Male 25.7
Sample D Male 19.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.4
Sample A Male 12.3
Sample B Male 12.3
Sample C Female 12.9
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
74800915 Antisense, RP_060315_02_A08, Mouse strain C57BL/6J (56 days, male) 7.7
413770 Antisense, RP_040809_01_C01, Mouse strain C57BL/6J (56 days, male) 5.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.