BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA:12.8 nTPM
GTEx:21.5 nTPM
FANTOM5:35.4 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:46.6 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA042907
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.7
2846 Female, age 79, unknown 15.7
2290 Female, age 72, unknown 14.9
2289 Male, age 61, right hemisphere 11.2
2481 Female, age 94, left hemisphere 10.1
1781 Male, age 74, unknown 9.3
1857 Female, age 85, left hemisphere 9.0
1854 Male, age 80, left hemisphere 7.8
2288 Male, age 75, left hemisphere 7.7
Claustrum
nTPM: 5.6
2568 Male, age 61, both hemispheres 6.8
2196 Female, age 79, unknown 6.5
2284 Female, age 91, both hemispheres 6.2
2645 Female, age 72, unknown 5.9
2198 Male, age 80, both hemispheres 5.7
2392 Female, age 94, both hemispheres 5.0
1956 Male, age 74, unknown 4.9
2292 Female, age 85, both hemispheres 4.9
2491 Male, age 75, both hemispheres 4.6
Globus pallidus, externus
nTPM: 5.4
2646 Male, age 61, right hemisphere 5.9
2395 Male, age 75, both hemispheres 5.7
2567 Female, age 72, unknown 5.7
1996 Male, age 80, right hemisphere 5.0
2772 Female, age 79, unknown 4.6
Globus pallidus, internus
nTPM: 5.0
2483 Female, age 94, right hemisphere 7.5
2566 Female, age 72, unknown 5.3
2111 Female, age 85, right hemisphere 4.8
2037 Male, age 80, right hemisphere 4.7
2778 Female, age 91, both hemispheres 4.4
1818 Male, age 74, unknown 4.2
2287 Male, age 75, right hemisphere 4.0
Nucleus accumbens
nTPM: 8.3
1783 Male, age 74, unknown 12.3
2824 Male, age 61, right hemisphere 8.6
1806 Female, age 85, left hemisphere 8.5
1856 Female, age 91, right hemisphere 8.5
2698 Female, age 72, unknown 8.3
2391 Female, age 94, left hemisphere 7.3
2286 Male, age 75, left hemisphere 6.8
2732 Male, age 80, right hemisphere 6.2
Nucleus basalis of Meynert
nTPM: 9.5
2484 Female, age 94, left hemisphere 13.6
2393 Male, age 80, right hemisphere 8.9
2821 Male, age 75, both hemispheres 8.0
2569 Male, age 61, both hemispheres 7.6
Nucleus of the diagonal band
nTPM: 5.3
2029 Male, age 61, right hemisphere 5.7
2195 Female, age 85, both hemispheres 5.6
2775 Male, age 80, right hemisphere 5.4
1812 Female, age 91, both hemispheres 5.1
1979 Male, age 74, unknown 4.9
Olfactory tubercle
nTPM: 5.3
2487 Female, age 94, left hemisphere 5.7
2856 Male, age 75, right hemisphere 5.3
1998 Female, age 91, both hemispheres 5.1
1846 Male, age 80, right hemisphere 5.0
Putamen
nTPM: 12.8
2489 Female, age 72, unknown 20.3
2466 Female, age 79, unknown 16.7
1829 Male, age 74, unknown 15.9
2482 Female, age 94, left hemisphere 11.0
1838 Male, age 80, right hemisphere 9.3
2647 Male, age 75, left hemisphere 9.3
1937 Female, age 91, right hemisphere 7.2
Septal nuclei
nTPM: 5.5
2059 Female, age 85, both hemispheres 6.5
1960 Male, age 74, unknown 6.2
2394 Male, age 61, left hemisphere 5.7
2199 Male, age 80, right hemisphere 5.2
2629 Female, age 94, right hemisphere 5.1
2031 Female, age 72, unknown 4.8
2009 Female, age 91, both hemispheres 4.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.3
Samples: 246

Max nTPM: 49.2
Min nTPM: 2.8
Std nTPM: 7.6
Median nTPM: 17.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 49.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 42.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 41.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 38.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 37.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 35.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 34.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 34.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 33.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 33.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 32.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.5
Samples: 246

Max nTPM: 31.1
Min nTPM: 2.8
Std nTPM: 5.3
Median nTPM: 13.0
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 31.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 28.7
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 26.4
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 25.6
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 25.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 25.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 25.0
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 24.0
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 23.8
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 23.8
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 23.1
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Brain - Putamen (basal ganglia)
Average nTPM: 21.5
Samples: 205

Max nTPM: 43.1
Min nTPM: 3.4
Std nTPM: 8.1
Median nTPM: 21.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 43.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 41.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 41.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 39.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 38.2
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 37.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 37.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 35.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 35.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 34.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 34.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.4
FF:10164-103B2 76 years, female 35.4
Globus pallidus
Scaled Tags Per Million: 21.8
FF:10175-103C4 60 years, female 22.1
FF:10161-103A8 76 years, female 21.6
Nucleus accumbens
Scaled Tags Per Million: 19.6
FF:10037-101F1 23-56 years, mixed 19.6
Putamen
Scaled Tags Per Million: 29.1
FF:10176-103C5 60 years, female 29.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Caudate
nTPM: 15.8
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.2
Sample A Female 14.2
Sample B Female 17.2
Sample C Male 15.7
Sample D Male 15.9
Putamen
nTPM: 13.4
Samples: 4

Max nTPM: 17.0
Min nTPM: 10.1
Sample A Female 11.3
Sample B Female 15.1
Sample C Male 10.1
Sample D Male 17.0
Septum
nTPM: 12.8
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.0
Sample A Female 15.4
Sample B Female 14.8
Sample C Male 10.8
Sample D Male 10.0
Ventral pallidum
nTPM: 13.9
Samples: 4

Max nTPM: 15.4
Min nTPM: 11.5
Sample A Female 15.4
Sample B Female 14.1
Sample C Male 11.5
Sample D Male 14.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 46.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 46.6
Samples: 4

Max nTPM: 54.9
Min nTPM: 38.1
Sample A Male 50.6
Sample B Male 54.9
Sample C Female 38.1
Sample D Female 42.8
Septum
nTPM: 32.5
Samples: 4

Max nTPM: 33.2
Min nTPM: 32.2
Sample A Male 33.2
Sample B Male 32.2
Sample C Female 32.2
Sample D Female 32.4
Ventral forebrain
nTPM: 33.0
Samples: 4

Max nTPM: 37.2
Min nTPM: 29.3
Sample A Male 32.3
Sample B Male 33.0
Sample C Female 37.2
Sample D Female 29.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68203498 Antisense, RP_041208_01_D06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
68203498 Antisense, RP_041208_01_D06, Mouse strain C57BL/6J (56 days, male) 0.1

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