MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.4 nTPM
HPA:50.4 nTPM
GTEx:45.1 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:6.8 nTPM
Mouse:6.1 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.7
2411 Female, age 72, unknown 50.6
1870 Female, age 42, unknown 49.6
2019 Male, age 18, unknown 49.0
1833 Male, age 53, unknown 48.6
1830 Male, age 51, unknown 48.5
1827 Male, age 72, unknown 47.4
2828 Female, age 72, unknown 46.8
2666 Male, age 74, left hemisphere 46.3
2586 Male, age 75, left hemisphere 46.0
2219 Male, age 76, both hemispheres 44.7
Dorsal raphe nucleus
nTPM: 48.1
2750 Male, age 76, both hemispheres 49.3
2298 Female, age 72, unknown 48.8
2016 Female, age 72, unknown 48.0
1828 Male, age 53, unknown 47.5
2047 Male, age 72, unknown 46.9
Inferior colliculus
nTPM: 45.8
1890 Male, age 53, unknown 46.2
1848 Female, age 42, unknown 46.1
2097 Female, age 72, unknown 46.1
2849 Male, age 72, unknown 44.9
Median raphe nucleus
nTPM: 49.5
2220 Male, age 76, midline 49.5
Pedunculopontine tegmental nucleus
nTPM: 49.2
2334 Male, age 80, both hemispheres 49.9
2338 Male, age 61, both hemispheres 49.3
1921 Female, age 85, both hemispheres 48.4
Periaquaductal grey, anterior
nTPM: 45.2
2502 Female, age 75, unknown 46.2
1795 Male, age 51, unknown 45.1
1947 Male, age 18, unknown 44.4
Periaquaductal grey, dorsal
nTPM: 47.0
2850 Male, age 76, both hemispheres 48.6
2464 Female, age 72, unknown 47.8
1831 Male, age 72, unknown 46.7
1840 Male, age 53, unknown 44.7
Periaquaductal grey, lateral
nTPM: 46.6
2053 Male, age 18, unknown 47.2
2140 Male, age 76, both hemispheres 47.1
2272 Male, age 74, both hemispheres 45.4
Pretectal area
nTPM: 47.0
2667 Female, age 75, unknown 49.3
1817 Female, age 42, unknown 48.6
1815 Male, age 53, unknown 48.2
2316 Male, age 76, right hemisphere 48.1
2007 Male, age 72, unknown 47.5
2825 Male, age 18, unknown 46.6
1816 Male, age 51, unknown 46.4
2273 Male, age 74, both hemispheres 46.2
2224 Female, age 72, unknown 46.0
2407 Male, age 75, both hemispheres 45.3
1944 Female, age 72, unknown 45.1
Red nucleus
nTPM: 50.4
1904 Male, age 53, unknown 53.1
1821 Female, age 72, unknown 53.0
1954 Female, age 42, unknown 52.4
1865 Male, age 51, unknown 51.7
2823 Male, age 76, right hemisphere 51.5
2503 Female, age 72, unknown 51.0
2785 Male, age 18, unknown 50.2
2769 Male, age 72, unknown 49.6
2227 Male, age 72, unknown 49.3
2588 Male, age 74, left hemisphere 49.0
2725 Female, age 75, unknown 48.9
2584 Male, age 75, left hemisphere 45.0
Substantia nigra
nTPM: 47.0
2409 Female, age 72, unknown 50.4
1889 Female, age 72, unknown 48.7
2699 Male, age 18, unknown 48.3
1851 Male, age 51, unknown 47.9
1916 Female, age 42, unknown 46.9
2241 Male, age 72, unknown 46.6
2583 Male, age 75, right hemisphere 45.9
1941 Male, age 53, unknown 45.4
2590 Female, age 75, unknown 45.2
2665 Male, age 74, both hemispheres 45.2
Superior colliculus
nTPM: 47.5
1913 Female, age 42, unknown 51.8
1995 Male, age 72, unknown 51.7
1895 Male, age 76, right hemisphere 48.5
2587 Male, age 74, left hemisphere 48.5
1796 Male, age 53, unknown 47.5
1839 Male, age 51, unknown 47.2
2668 Female, age 75, unknown 47.0
2261 Male, age 18, unknown 45.5
2087 Female, age 72, unknown 44.6
2664 Male, age 75, both hemispheres 42.4
Ventral tegmental area
nTPM: 48.2
2410 Female, age 72, unknown 50.4
2223 Female, age 72, unknown 49.2
2218 Male, age 76, both hemispheres 48.4
2021 Male, age 53, unknown 47.6
1915 Female, age 42, unknown 47.4
1942 Male, age 51, unknown 46.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.1
Samples: 139

Max nTPM: 87.7
Min nTPM: 24.4
Std nTPM: 10.5
Median nTPM: 42.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 87.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 87.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 76.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 74.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 66.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 62.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 61.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 61.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 61.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 61.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 61.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.7
FF:10158-103A5 76 years, female 45.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.8
Pig sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 11.4
Min nTPM: 4.2
Sample A Female 11.4
Sample B Female 5.7
Sample C Male 5.8
Sample D Male 4.2
Periaqueductal gray
nTPM: 5.1
Samples: 3

Max nTPM: 5.6
Min nTPM: 4.9
Sample B Female 4.9
Sample C Male 4.9
Sample D Male 5.6
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 9.6
Min nTPM: 4.4
Sample A Female 9.6
Sample B Female 5.0
Sample C Male 5.7
Sample D Male 4.4
Superior colliculi
nTPM: 5.9
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.4
Sample A Female 8.2
Sample B Female 4.9
Sample C Male 6.1
Sample D Male 4.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.4
Sample A Male 6.1
Sample B Male 5.4
Sample C Female 6.3
Sample D Female 6.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69443349 Antisense, RP_050414_03_H07, Mouse strain C57BL/6J (56 days, male) 1.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.