BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:52.5 nTPM
HPA:52.5 nTPM
GTEx:36.9 nTPM
FANTOM5:44.0 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:6.5 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040126
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.6
2481 Female, age 94, left hemisphere 50.0
2288 Male, age 75, left hemisphere 47.3
1854 Male, age 80, left hemisphere 45.8
2289 Male, age 61, right hemisphere 45.0
2846 Female, age 79, unknown 45.0
1857 Female, age 85, left hemisphere 44.6
1781 Male, age 74, unknown 43.9
2290 Female, age 72, unknown 43.6
Claustrum
nTPM: 44.7
1956 Male, age 74, unknown 47.6
2292 Female, age 85, both hemispheres 47.3
2491 Male, age 75, both hemispheres 46.4
2196 Female, age 79, unknown 44.8
2392 Female, age 94, both hemispheres 44.4
2198 Male, age 80, both hemispheres 43.8
2568 Male, age 61, both hemispheres 43.3
2645 Female, age 72, unknown 42.5
2284 Female, age 91, both hemispheres 42.0
Globus pallidus, externus
nTPM: 51.1
1996 Male, age 80, right hemisphere 56.2
2772 Female, age 79, unknown 51.7
2567 Female, age 72, unknown 50.7
2646 Male, age 61, right hemisphere 48.9
2395 Male, age 75, both hemispheres 48.1
Globus pallidus, internus
nTPM: 52.5
2037 Male, age 80, right hemisphere 54.2
2778 Female, age 91, both hemispheres 53.5
1818 Male, age 74, unknown 53.2
2287 Male, age 75, right hemisphere 52.8
2111 Female, age 85, right hemisphere 52.7
2566 Female, age 72, unknown 51.2
2483 Female, age 94, right hemisphere 49.5
Nucleus accumbens
nTPM: 45.9
2391 Female, age 94, left hemisphere 51.4
2286 Male, age 75, left hemisphere 48.9
2732 Male, age 80, right hemisphere 46.4
2698 Female, age 72, unknown 45.7
1806 Female, age 85, left hemisphere 45.6
2824 Male, age 61, right hemisphere 43.6
1783 Male, age 74, unknown 43.5
1856 Female, age 91, right hemisphere 42.0
Nucleus basalis of Meynert
nTPM: 46.4
2569 Male, age 61, both hemispheres 49.5
2484 Female, age 94, left hemisphere 45.7
2821 Male, age 75, both hemispheres 45.7
2393 Male, age 80, right hemisphere 44.8
Nucleus of the diagonal band
nTPM: 43.1
1979 Male, age 74, unknown 45.1
1812 Female, age 91, both hemispheres 44.4
2775 Male, age 80, right hemisphere 42.2
2195 Female, age 85, both hemispheres 42.1
2029 Male, age 61, right hemisphere 41.9
Olfactory tubercle
nTPM: 42.7
1846 Male, age 80, right hemisphere 43.6
2856 Male, age 75, right hemisphere 42.7
1998 Female, age 91, both hemispheres 42.6
2487 Female, age 94, left hemisphere 41.8
Putamen
nTPM: 44.5
2482 Female, age 94, left hemisphere 50.0
2489 Female, age 72, unknown 45.0
1937 Female, age 91, right hemisphere 44.2
2647 Male, age 75, left hemisphere 43.9
1829 Male, age 74, unknown 42.9
1838 Male, age 80, right hemisphere 42.9
2466 Female, age 79, unknown 42.9
Septal nuclei
nTPM: 44.6
2199 Male, age 80, right hemisphere 47.2
2394 Male, age 61, left hemisphere 46.3
2629 Female, age 94, right hemisphere 44.7
2031 Female, age 72, unknown 43.8
2059 Female, age 85, both hemispheres 43.8
2009 Female, age 91, both hemispheres 43.7
1960 Male, age 74, unknown 43.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.0
Samples: 246

Max nTPM: 69.0
Min nTPM: 14.4
Std nTPM: 8.3
Median nTPM: 31.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 69.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 68.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 61.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 55.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 53.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 50.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 47.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 47.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 47.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 46.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 45.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.8
Samples: 246

Max nTPM: 73.4
Min nTPM: 15.5
Std nTPM: 9.7
Median nTPM: 28.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 73.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 68.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 65.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 65.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 60.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 57.3
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 52.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 51.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 50.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 49.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 47.8
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Brain - Putamen (basal ganglia)
Average nTPM: 36.9
Samples: 205

Max nTPM: 94.3
Min nTPM: 17.0
Std nTPM: 9.6
Median nTPM: 36.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 94.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 65.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 63.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 60.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 56.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 56.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 56.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 55.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 54.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 54.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 52.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 34.5
FF:10164-103B2 76 years, female 34.5
Globus pallidus
Scaled Tags Per Million: 44.0
FF:10175-103C4 60 years, female 47.3
FF:10161-103A8 76 years, female 40.6
Nucleus accumbens
Scaled Tags Per Million: 31.4
FF:10037-101F1 23-56 years, mixed 31.4
Putamen
Scaled Tags Per Million: 20.8
FF:10176-103C5 60 years, female 20.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Caudate
nTPM: 4.1
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.3
Sample A Female 3.9
Sample B Female 4.6
Sample C Male 4.6
Sample D Male 3.3
Putamen
nTPM: 5.6
Samples: 4

Max nTPM: 7.4
Min nTPM: 4.0
Sample A Female 7.4
Sample B Female 4.0
Sample C Male 6.5
Sample D Male 4.4
Septum
nTPM: 4.7
Samples: 4

Max nTPM: 6.4
Min nTPM: 3.1
Sample A Female 6.4
Sample B Female 3.1
Sample C Male 5.0
Sample D Male 4.1
Ventral pallidum
nTPM: 4.8
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.2
Sample A Female 5.2
Sample B Female 5.3
Sample C Male 5.4
Sample D Male 3.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.2
Samples: 4

Max nTPM: 7.2
Min nTPM: 3.3
Sample A Male 4.8
Sample B Male 3.3
Sample C Female 7.2
Sample D Female 5.4
Septum
nTPM: 6.5
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.4
Sample A Male 5.4
Sample B Male 7.8
Sample C Female 6.6
Sample D Female 6.3
Ventral forebrain
nTPM: 5.3
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.3
Sample A Male 5.7
Sample B Male 3.3
Sample C Female 6.2
Sample D Female 5.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
69443349 Antisense, RP_050414_03_H07, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.1
69443349 Antisense, RP_050414_03_H07, Mouse strain C57BL/6J (56 days, male) 1.1

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