MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:65.6 nTPM
HPA:65.6 nTPM
GTEx:76.2 nTPM
FANTOM5:148.7 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:35.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.2
2586 Male, age 75, left hemisphere 73.4
1833 Male, age 53, unknown 66.3
2411 Female, age 72, unknown 66.0
2219 Male, age 76, both hemispheres 63.0
2666 Male, age 74, left hemisphere 62.7
2828 Female, age 72, unknown 62.5
1830 Male, age 51, unknown 62.0
2019 Male, age 18, unknown 61.9
1870 Female, age 42, unknown 58.1
1827 Male, age 72, unknown 56.2
Dorsal raphe nucleus
nTPM: 57.7
2750 Male, age 76, both hemispheres 63.6
1828 Male, age 53, unknown 61.7
2047 Male, age 72, unknown 56.7
2298 Female, age 72, unknown 54.2
2016 Female, age 72, unknown 52.2
Inferior colliculus
nTPM: 55.6
2849 Male, age 72, unknown 60.7
1848 Female, age 42, unknown 56.1
1890 Male, age 53, unknown 55.2
2097 Female, age 72, unknown 50.3
Median raphe nucleus
nTPM: 65.6
2220 Male, age 76, midline 65.6
Pedunculopontine tegmental nucleus
nTPM: 57.4
2334 Male, age 80, both hemispheres 63.8
1921 Female, age 85, both hemispheres 56.7
2338 Male, age 61, both hemispheres 51.6
Periaquaductal grey, anterior
nTPM: 61.5
2502 Female, age 75, unknown 63.3
1947 Male, age 18, unknown 62.2
1795 Male, age 51, unknown 58.9
Periaquaductal grey, dorsal
nTPM: 53.9
2464 Female, age 72, unknown 57.6
2850 Male, age 76, both hemispheres 55.7
1831 Male, age 72, unknown 52.3
1840 Male, age 53, unknown 49.9
Periaquaductal grey, lateral
nTPM: 56.6
2272 Male, age 74, both hemispheres 60.5
2140 Male, age 76, both hemispheres 57.9
2053 Male, age 18, unknown 51.4
Pretectal area
nTPM: 57.8
1815 Male, age 53, unknown 62.4
1817 Female, age 42, unknown 61.3
2007 Male, age 72, unknown 60.9
2667 Female, age 75, unknown 59.2
2316 Male, age 76, right hemisphere 58.4
2825 Male, age 18, unknown 57.7
1816 Male, age 51, unknown 56.9
1944 Female, age 72, unknown 56.2
2224 Female, age 72, unknown 55.8
2407 Male, age 75, both hemispheres 53.7
2273 Male, age 74, both hemispheres 53.3
Red nucleus
nTPM: 64.8
2769 Male, age 72, unknown 69.1
2227 Male, age 72, unknown 68.7
2588 Male, age 74, left hemisphere 67.4
2584 Male, age 75, left hemisphere 67.2
1904 Male, age 53, unknown 65.8
2785 Male, age 18, unknown 65.4
1865 Male, age 51, unknown 64.1
1954 Female, age 42, unknown 63.7
2503 Female, age 72, unknown 63.5
2823 Male, age 76, right hemisphere 63.1
2725 Female, age 75, unknown 60.5
1821 Female, age 72, unknown 58.9
Substantia nigra
nTPM: 59.6
1916 Female, age 42, unknown 69.2
1851 Male, age 51, unknown 66.1
2699 Male, age 18, unknown 62.8
2665 Male, age 74, both hemispheres 62.5
2583 Male, age 75, right hemisphere 61.9
2590 Female, age 75, unknown 58.2
1889 Female, age 72, unknown 57.2
1941 Male, age 53, unknown 54.2
2409 Female, age 72, unknown 52.2
2241 Male, age 72, unknown 51.5
Superior colliculus
nTPM: 58.4
2664 Male, age 75, both hemispheres 62.3
1913 Female, age 42, unknown 62.2
2261 Male, age 18, unknown 60.3
1839 Male, age 51, unknown 60.1
2668 Female, age 75, unknown 60.1
1995 Male, age 72, unknown 60.0
2087 Female, age 72, unknown 58.1
1796 Male, age 53, unknown 57.3
1895 Male, age 76, right hemisphere 52.6
2587 Male, age 74, left hemisphere 51.1
Ventral tegmental area
nTPM: 63.1
2410 Female, age 72, unknown 74.4
2218 Male, age 76, both hemispheres 63.9
2021 Male, age 53, unknown 61.3
2223 Female, age 72, unknown 60.7
1942 Male, age 51, unknown 59.4
1915 Female, age 42, unknown 59.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.2
Samples: 139

Max nTPM: 127.7
Min nTPM: 35.8
Std nTPM: 17.4
Median nTPM: 75.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 127.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 125.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 114.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 114.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 113.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 111.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 106.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 106.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 105.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 104.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 100.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.7
FF:10158-103A5 76 years, female 148.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.9
Pig sample Sample description nTPM
Midbrain
nTPM: 45.3
Samples: 4

Max nTPM: 51.1
Min nTPM: 39.4
Sample A Female 51.1
Sample B Female 39.4
Sample C Male 49.3
Sample D Male 41.4
Periaqueductal gray
nTPM: 38.1
Samples: 3

Max nTPM: 42.7
Min nTPM: 35.7
Sample B Female 35.9
Sample C Male 42.7
Sample D Male 35.7
Substantia nigra
nTPM: 48.9
Samples: 4

Max nTPM: 56.8
Min nTPM: 40.5
Sample A Female 56.8
Sample B Female 40.5
Sample C Male 54.9
Sample D Male 43.4
Superior colliculi
nTPM: 47.9
Samples: 4

Max nTPM: 51.5
Min nTPM: 46.3
Sample A Female 51.5
Sample B Female 46.6
Sample C Male 47.3
Sample D Male 46.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 37.9
Min nTPM: 34.2
Sample A Male 37.9
Sample B Male 34.3
Sample C Female 34.2
Sample D Female 37.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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