BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:62.3 nTPM
HPA:62.3 nTPM
GTEx:80.6 nTPM
FANTOM5:148.4 Scaled Tags Per Million
Pig:42.2 nTPM
Mouse:53.1 nTPM

CAUDATE - Antibody stainingi
Antibody HPA042669
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.0
2288 Male, age 75, left hemisphere 57.2
2290 Female, age 72, unknown 54.1
1781 Male, age 74, unknown 53.7
2289 Male, age 61, right hemisphere 53.1
2846 Female, age 79, unknown 51.4
1854 Male, age 80, left hemisphere 50.5
2481 Female, age 94, left hemisphere 48.8
1857 Female, age 85, left hemisphere 47.3
Claustrum
nTPM: 58.9
2292 Female, age 85, both hemispheres 73.2
2284 Female, age 91, both hemispheres 62.7
2645 Female, age 72, unknown 61.0
2568 Male, age 61, both hemispheres 60.4
1956 Male, age 74, unknown 57.2
2491 Male, age 75, both hemispheres 56.4
2198 Male, age 80, both hemispheres 55.3
2196 Female, age 79, unknown 55.2
2392 Female, age 94, both hemispheres 48.6
Globus pallidus, externus
nTPM: 61.6
2567 Female, age 72, unknown 69.7
2646 Male, age 61, right hemisphere 65.5
2772 Female, age 79, unknown 61.2
1996 Male, age 80, right hemisphere 58.9
2395 Male, age 75, both hemispheres 52.6
Globus pallidus, internus
nTPM: 62.3
2111 Female, age 85, right hemisphere 72.7
2566 Female, age 72, unknown 66.7
2778 Female, age 91, both hemispheres 62.6
2287 Male, age 75, right hemisphere 61.0
1818 Male, age 74, unknown 59.4
2483 Female, age 94, right hemisphere 57.0
2037 Male, age 80, right hemisphere 56.9
Nucleus accumbens
nTPM: 52.3
2732 Male, age 80, right hemisphere 57.6
1783 Male, age 74, unknown 56.3
2698 Female, age 72, unknown 53.4
1806 Female, age 85, left hemisphere 52.9
2286 Male, age 75, left hemisphere 51.2
2391 Female, age 94, left hemisphere 50.7
2824 Male, age 61, right hemisphere 48.4
1856 Female, age 91, right hemisphere 48.1
Nucleus basalis of Meynert
nTPM: 53.2
2569 Male, age 61, both hemispheres 62.3
2484 Female, age 94, left hemisphere 53.6
2821 Male, age 75, both hemispheres 50.9
2393 Male, age 80, right hemisphere 45.8
Nucleus of the diagonal band
nTPM: 51.5
1979 Male, age 74, unknown 55.7
2029 Male, age 61, right hemisphere 54.0
2195 Female, age 85, both hemispheres 52.1
2775 Male, age 80, right hemisphere 50.3
1812 Female, age 91, both hemispheres 45.5
Olfactory tubercle
nTPM: 51.1
2487 Female, age 94, left hemisphere 56.1
2856 Male, age 75, right hemisphere 51.9
1998 Female, age 91, both hemispheres 48.7
1846 Male, age 80, right hemisphere 47.7
Putamen
nTPM: 53.6
2489 Female, age 72, unknown 61.5
2647 Male, age 75, left hemisphere 55.3
1829 Male, age 74, unknown 53.9
2482 Female, age 94, left hemisphere 52.2
2466 Female, age 79, unknown 52.0
1937 Female, age 91, right hemisphere 50.2
1838 Male, age 80, right hemisphere 50.0
Septal nuclei
nTPM: 51.1
2394 Male, age 61, left hemisphere 59.0
2059 Female, age 85, both hemispheres 53.5
2199 Male, age 80, right hemisphere 52.9
2629 Female, age 94, right hemisphere 52.1
1960 Male, age 74, unknown 50.4
2009 Female, age 91, both hemispheres 46.1
2031 Female, age 72, unknown 43.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 80.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 73.8
Samples: 246

Max nTPM: 114.6
Min nTPM: 35.8
Std nTPM: 14.6
Median nTPM: 73.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 114.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 108.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 107.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 107.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 106.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 103.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 102.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 100.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 100.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 99.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 98.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 75.0
Samples: 246

Max nTPM: 119.7
Min nTPM: 30.8
Std nTPM: 15.8
Median nTPM: 74.4
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 119.7
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 113.4
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 113.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 111.9
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 109.9
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 108.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 106.8
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 106.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 106.1
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 105.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 103.5
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Brain - Putamen (basal ganglia)
Average nTPM: 80.6
Samples: 205

Max nTPM: 137.6
Min nTPM: 42.0
Std nTPM: 16.2
Median nTPM: 81.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 137.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 120.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 116.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 114.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 112.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 111.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 110.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 110.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 109.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 108.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 108.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 122.0
FF:10164-103B2 76 years, female 122.0
Globus pallidus
Scaled Tags Per Million: 148.4
FF:10175-103C4 60 years, female 157.0
FF:10161-103A8 76 years, female 139.8
Nucleus accumbens
Scaled Tags Per Million: 108.2
FF:10037-101F1 23-56 years, mixed 108.2
Putamen
Scaled Tags Per Million: 127.6
FF:10176-103C5 60 years, female 127.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.2
Pig sample Sample description nTPM
Caudate
nTPM: 38.8
Samples: 4

Max nTPM: 47.1
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 41.0
Sample C Male 47.1
Sample D Male 35.3
Putamen
nTPM: 39.7
Samples: 4

Max nTPM: 43.9
Min nTPM: 32.3
Sample A Female 39.7
Sample B Female 32.3
Sample C Male 42.9
Sample D Male 43.9
Septum
nTPM: 42.2
Samples: 4

Max nTPM: 52.1
Min nTPM: 35.4
Sample A Female 40.4
Sample B Female 41.0
Sample C Male 52.1
Sample D Male 35.4
Ventral pallidum
nTPM: 41.0
Samples: 4

Max nTPM: 55.5
Min nTPM: 32.6
Sample A Female 32.6
Sample B Female 36.7
Sample C Male 55.5
Sample D Male 39.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 49.4
Samples: 4

Max nTPM: 59.1
Min nTPM: 42.7
Sample A Male 49.3
Sample B Male 59.1
Sample C Female 42.7
Sample D Female 46.6
Septum
nTPM: 47.3
Samples: 4

Max nTPM: 50.0
Min nTPM: 43.8
Sample A Male 47.4
Sample B Male 48.1
Sample C Female 50.0
Sample D Female 43.8
Ventral forebrain
nTPM: 53.1
Samples: 4

Max nTPM: 56.3
Min nTPM: 49.7
Sample A Male 54.8
Sample B Male 51.6
Sample C Female 56.3
Sample D Female 49.7

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The Human Protein Atlas

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