MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:190.7 nTPM
HPA:190.7 nTPM
GTEx:131.7 nTPM
FANTOM5:48.0 Scaled Tags Per Million
Pig:91.4 nTPM
Mouse:118.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 190.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 179.9
2828 Female, age 72, unknown 199.7
2586 Male, age 75, left hemisphere 197.7
2019 Male, age 18, unknown 191.4
1827 Male, age 72, unknown 183.1
2411 Female, age 72, unknown 177.3
2666 Male, age 74, left hemisphere 176.5
1870 Female, age 42, unknown 176.0
2219 Male, age 76, both hemispheres 172.0
1833 Male, age 53, unknown 164.5
1830 Male, age 51, unknown 161.1
Dorsal raphe nucleus
nTPM: 184.1
2298 Female, age 72, unknown 190.0
2750 Male, age 76, both hemispheres 189.8
2047 Male, age 72, unknown 187.4
1828 Male, age 53, unknown 184.4
2016 Female, age 72, unknown 168.7
Inferior colliculus
nTPM: 161.0
1890 Male, age 53, unknown 171.2
2097 Female, age 72, unknown 164.8
1848 Female, age 42, unknown 157.9
2849 Male, age 72, unknown 150.2
Median raphe nucleus
nTPM: 187.1
2220 Male, age 76, midline 187.1
Pedunculopontine tegmental nucleus
nTPM: 171.9
1921 Female, age 85, both hemispheres 185.6
2334 Male, age 80, both hemispheres 173.6
2338 Male, age 61, both hemispheres 156.6
Periaquaductal grey, anterior
nTPM: 189.1
2502 Female, age 75, unknown 199.2
1795 Male, age 51, unknown 194.8
1947 Male, age 18, unknown 173.3
Periaquaductal grey, dorsal
nTPM: 160.6
1831 Male, age 72, unknown 167.1
2464 Female, age 72, unknown 161.4
1840 Male, age 53, unknown 159.0
2850 Male, age 76, both hemispheres 154.9
Periaquaductal grey, lateral
nTPM: 162.4
2053 Male, age 18, unknown 166.0
2272 Male, age 74, both hemispheres 162.6
2140 Male, age 76, both hemispheres 158.5
Pretectal area
nTPM: 190.7
2007 Male, age 72, unknown 229.7
1816 Male, age 51, unknown 229.1
1944 Female, age 72, unknown 217.8
1817 Female, age 42, unknown 204.9
1815 Male, age 53, unknown 197.2
2667 Female, age 75, unknown 188.4
2273 Male, age 74, both hemispheres 169.8
2224 Female, age 72, unknown 167.3
2316 Male, age 76, right hemisphere 166.9
2825 Male, age 18, unknown 164.9
2407 Male, age 75, both hemispheres 162.0
Red nucleus
nTPM: 181.9
2785 Male, age 18, unknown 204.6
2588 Male, age 74, left hemisphere 196.0
2503 Female, age 72, unknown 184.2
2725 Female, age 75, unknown 181.6
2227 Male, age 72, unknown 181.4
2584 Male, age 75, left hemisphere 179.7
2769 Male, age 72, unknown 179.2
1821 Female, age 72, unknown 178.8
1954 Female, age 42, unknown 177.6
1904 Male, age 53, unknown 177.5
2823 Male, age 76, right hemisphere 173.2
1865 Male, age 51, unknown 168.7
Substantia nigra
nTPM: 185.0
2665 Male, age 74, both hemispheres 220.0
1889 Female, age 72, unknown 207.8
1916 Female, age 42, unknown 206.3
1851 Male, age 51, unknown 195.6
1941 Male, age 53, unknown 180.0
2699 Male, age 18, unknown 176.2
2583 Male, age 75, right hemisphere 173.1
2590 Female, age 75, unknown 169.7
2241 Male, age 72, unknown 161.3
2409 Female, age 72, unknown 160.1
Superior colliculus
nTPM: 183.2
2087 Female, age 72, unknown 216.2
1796 Male, age 53, unknown 194.1
2261 Male, age 18, unknown 191.5
2668 Female, age 75, unknown 185.1
1913 Female, age 42, unknown 181.7
2664 Male, age 75, both hemispheres 181.4
1995 Male, age 72, unknown 176.3
1895 Male, age 76, right hemisphere 170.3
2587 Male, age 74, left hemisphere 168.9
1839 Male, age 51, unknown 166.6
Ventral tegmental area
nTPM: 181.0
1915 Female, age 42, unknown 190.0
2218 Male, age 76, both hemispheres 188.6
1942 Male, age 51, unknown 183.5
2410 Female, age 72, unknown 179.8
2021 Male, age 53, unknown 172.1
2223 Female, age 72, unknown 172.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 131.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.7
Samples: 139

Max nTPM: 246.1
Min nTPM: 38.0
Std nTPM: 42.7
Median nTPM: 128.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 246.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 244.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 239.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 225.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 215.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 213.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 203.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 202.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 200.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 193.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 191.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.0
FF:10158-103A5 76 years, female 48.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.4
Pig sample Sample description nTPM
Midbrain
nTPM: 87.7
Samples: 4

Max nTPM: 110.7
Min nTPM: 72.6
Sample A Female 110.7
Sample B Female 87.8
Sample C Male 72.6
Sample D Male 79.5
Periaqueductal gray
nTPM: 77.6
Samples: 3

Max nTPM: 81.2
Min nTPM: 71.0
Sample B Female 80.5
Sample C Male 81.2
Sample D Male 71.0
Substantia nigra
nTPM: 79.8
Samples: 4

Max nTPM: 109.8
Min nTPM: 63.3
Sample A Female 109.8
Sample B Female 63.3
Sample C Male 73.8
Sample D Male 72.3
Superior colliculi
nTPM: 91.4
Samples: 4

Max nTPM: 109.8
Min nTPM: 78.6
Sample A Female 109.8
Sample B Female 78.6
Sample C Male 82.7
Sample D Male 94.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 118.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.2
Samples: 4

Max nTPM: 130.6
Min nTPM: 102.4
Sample A Male 130.6
Sample B Male 115.9
Sample C Female 102.4
Sample D Female 123.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68546311 Antisense, RP_050120_02_C12, Mouse strain C57BL/6J (56 days, male) 0.7
74300849 Antisense, RP_051219_03_H07, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.