MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:113.9 nTPM
HPA:113.9 nTPM
GTEx:83.6 nTPM
FANTOM5:113.5 Scaled Tags Per Million
Pig:54.5 nTPM
Mouse:22.4 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.4
2586 Male, age 75, left hemisphere 206.0
2828 Female, age 72, unknown 135.8
2666 Male, age 74, left hemisphere 113.6
1827 Male, age 72, unknown 95.4
1833 Male, age 53, unknown 82.7
1870 Female, age 42, unknown 78.7
1830 Male, age 51, unknown 70.5
2411 Female, age 72, unknown 66.3
2219 Male, age 76, both hemispheres 47.8
2019 Male, age 18, unknown 47.1
Dorsal raphe nucleus
nTPM: 94.6
2047 Male, age 72, unknown 117.7
1828 Male, age 53, unknown 111.6
2016 Female, age 72, unknown 108.2
2298 Female, age 72, unknown 85.3
2750 Male, age 76, both hemispheres 50.1
Inferior colliculus
nTPM: 96.5
2849 Male, age 72, unknown 116.4
1848 Female, age 42, unknown 103.7
1890 Male, age 53, unknown 88.6
2097 Female, age 72, unknown 77.4
Median raphe nucleus
nTPM: 47.9
2220 Male, age 76, midline 47.9
Pedunculopontine tegmental nucleus
nTPM: 54.7
1921 Female, age 85, both hemispheres 66.5
2334 Male, age 80, both hemispheres 57.1
2338 Male, age 61, both hemispheres 40.4
Periaquaductal grey, anterior
nTPM: 111.4
1795 Male, age 51, unknown 120.0
1947 Male, age 18, unknown 109.3
2502 Female, age 75, unknown 105.0
Periaquaductal grey, dorsal
nTPM: 107.8
2850 Male, age 76, both hemispheres 123.1
1840 Male, age 53, unknown 122.6
2464 Female, age 72, unknown 94.3
1831 Male, age 72, unknown 91.2
Periaquaductal grey, lateral
nTPM: 113.9
2140 Male, age 76, both hemispheres 130.4
2053 Male, age 18, unknown 129.9
2272 Male, age 74, both hemispheres 81.4
Pretectal area
nTPM: 88.3
2825 Male, age 18, unknown 111.7
1816 Male, age 51, unknown 100.4
1944 Female, age 72, unknown 97.2
2667 Female, age 75, unknown 90.1
2407 Male, age 75, both hemispheres 89.5
1817 Female, age 42, unknown 87.2
2316 Male, age 76, right hemisphere 82.2
1815 Male, age 53, unknown 81.4
2273 Male, age 74, both hemispheres 78.9
2224 Female, age 72, unknown 76.7
2007 Male, age 72, unknown 76.5
Red nucleus
nTPM: 82.2
2725 Female, age 75, unknown 108.2
1954 Female, age 42, unknown 99.2
2584 Male, age 75, left hemisphere 97.5
2769 Male, age 72, unknown 85.9
2588 Male, age 74, left hemisphere 85.3
2503 Female, age 72, unknown 83.0
2227 Male, age 72, unknown 81.9
2823 Male, age 76, right hemisphere 79.9
1904 Male, age 53, unknown 73.3
1865 Male, age 51, unknown 70.0
1821 Female, age 72, unknown 65.3
2785 Male, age 18, unknown 57.2
Substantia nigra
nTPM: 74.9
2699 Male, age 18, unknown 105.2
2583 Male, age 75, right hemisphere 96.0
1889 Female, age 72, unknown 81.1
1916 Female, age 42, unknown 79.5
2409 Female, age 72, unknown 72.9
2590 Female, age 75, unknown 70.3
2665 Male, age 74, both hemispheres 67.3
1851 Male, age 51, unknown 62.7
1941 Male, age 53, unknown 57.9
2241 Male, age 72, unknown 56.2
Superior colliculus
nTPM: 92.2
2664 Male, age 75, both hemispheres 169.1
2261 Male, age 18, unknown 108.2
1796 Male, age 53, unknown 98.5
2087 Female, age 72, unknown 89.5
1839 Male, age 51, unknown 86.7
1995 Male, age 72, unknown 82.4
2587 Male, age 74, left hemisphere 76.8
1913 Female, age 42, unknown 72.5
2668 Female, age 75, unknown 71.9
1895 Male, age 76, right hemisphere 66.7
Ventral tegmental area
nTPM: 71.2
1942 Male, age 51, unknown 95.5
2021 Male, age 53, unknown 75.0
2218 Male, age 76, both hemispheres 71.2
2410 Female, age 72, unknown 69.9
1915 Female, age 42, unknown 69.3
2223 Female, age 72, unknown 46.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.6
Samples: 139

Max nTPM: 327.3
Min nTPM: 8.4
Std nTPM: 59.3
Median nTPM: 71.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 327.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 318.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 276.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 267.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 240.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 227.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 201.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 175.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 171.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 162.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 162.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.5
FF:10158-103A5 76 years, female 113.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.5
Pig sample Sample description nTPM
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 68.4
Min nTPM: 38.6
Sample A Female 68.4
Sample B Female 38.6
Sample C Male 62.5
Sample D Male 48.3
Periaqueductal gray
nTPM: 42.8
Samples: 3

Max nTPM: 48.5
Min nTPM: 39.2
Sample B Female 40.8
Sample C Male 48.5
Sample D Male 39.2
Substantia nigra
nTPM: 50.0
Samples: 4

Max nTPM: 64.1
Min nTPM: 37.1
Sample A Female 60.4
Sample B Female 38.2
Sample C Male 64.1
Sample D Male 37.1
Superior colliculi
nTPM: 45.6
Samples: 4

Max nTPM: 56.1
Min nTPM: 33.1
Sample A Female 56.1
Sample B Female 33.1
Sample C Male 51.1
Sample D Male 41.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 26.0
Min nTPM: 20.1
Sample A Male 26.0
Sample B Male 21.5
Sample C Female 20.1
Sample D Female 22.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
68160845 Antisense, RP_041122_01_B06, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.