MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.0 nTPM
HPA:5.0 nTPM
GTEx:64.3 nTPM
FANTOM5:142.7 Scaled Tags Per Million
Mouse:3.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.8
2411 Female, age 72, unknown 2.4
2828 Female, age 72, unknown 2.4
1833 Male, age 53, unknown 2.3
1870 Female, age 42, unknown 2.1
1827 Male, age 72, unknown 2.0
2219 Male, age 76, both hemispheres 1.8
2019 Male, age 18, unknown 1.4
2666 Male, age 74, left hemisphere 1.4
1830 Male, age 51, unknown 1.3
2586 Male, age 75, left hemisphere 0.8
Dorsal raphe nucleus
nTPM: 1.9
2750 Male, age 76, both hemispheres 2.7
2047 Male, age 72, unknown 2.6
2298 Female, age 72, unknown 2.2
1828 Male, age 53, unknown 2.0
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 1.6
2849 Male, age 72, unknown 3.4
1848 Female, age 42, unknown 1.4
1890 Male, age 53, unknown 1.0
2097 Female, age 72, unknown 0.7
Median raphe nucleus
nTPM: 5.0
2220 Male, age 76, midline 5.0
Pedunculopontine tegmental nucleus
nTPM: 2.3
2334 Male, age 80, both hemispheres 3.9
1921 Female, age 85, both hemispheres 2.3
2338 Male, age 61, both hemispheres 0.8
Periaquaductal grey, anterior
nTPM: 2.3
1795 Male, age 51, unknown 2.7
1947 Male, age 18, unknown 2.1
2502 Female, age 75, unknown 2.0
Periaquaductal grey, dorsal
nTPM: 1.7
1831 Male, age 72, unknown 2.4
1840 Male, age 53, unknown 1.8
2850 Male, age 76, both hemispheres 1.5
2464 Female, age 72, unknown 0.9
Periaquaductal grey, lateral
nTPM: 0.5
2053 Male, age 18, unknown 0.7
2272 Male, age 74, both hemispheres 0.7
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 3.7
1944 Female, age 72, unknown 7.6
1816 Male, age 51, unknown 6.3
1817 Female, age 42, unknown 5.4
2007 Male, age 72, unknown 5.2
2667 Female, age 75, unknown 4.3
1815 Male, age 53, unknown 3.4
2407 Male, age 75, both hemispheres 2.6
2224 Female, age 72, unknown 2.5
2825 Male, age 18, unknown 2.3
2273 Male, age 74, both hemispheres 1.1
2316 Male, age 76, right hemisphere 0.2
Red nucleus
nTPM: 1.7
2588 Male, age 74, left hemisphere 3.0
2823 Male, age 76, right hemisphere 2.4
2503 Female, age 72, unknown 2.2
2584 Male, age 75, left hemisphere 2.2
2785 Male, age 18, unknown 2.2
1904 Male, age 53, unknown 1.3
2725 Female, age 75, unknown 1.3
1821 Female, age 72, unknown 1.2
2227 Male, age 72, unknown 1.2
1954 Female, age 42, unknown 1.1
2769 Male, age 72, unknown 0.9
1865 Male, age 51, unknown 0.8
Substantia nigra
nTPM: 2.7
1916 Female, age 42, unknown 5.4
1889 Female, age 72, unknown 4.4
1851 Male, age 51, unknown 3.3
1941 Male, age 53, unknown 3.3
2583 Male, age 75, right hemisphere 3.0
2699 Male, age 18, unknown 2.9
2590 Female, age 75, unknown 2.4
2409 Female, age 72, unknown 1.2
2241 Male, age 72, unknown 0.9
2665 Male, age 74, both hemispheres 0.7
Superior colliculus
nTPM: 2.6
2087 Female, age 72, unknown 5.6
2587 Male, age 74, left hemisphere 3.2
2261 Male, age 18, unknown 3.0
1796 Male, age 53, unknown 2.9
2668 Female, age 75, unknown 2.6
1913 Female, age 42, unknown 2.0
1895 Male, age 76, right hemisphere 1.9
2664 Male, age 75, both hemispheres 1.8
1839 Male, age 51, unknown 1.7
1995 Male, age 72, unknown 0.8
Ventral tegmental area
nTPM: 2.9
2218 Male, age 76, both hemispheres 4.1
1915 Female, age 42, unknown 3.4
2410 Female, age 72, unknown 3.2
2223 Female, age 72, unknown 3.0
2021 Male, age 53, unknown 2.0
1942 Male, age 51, unknown 1.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.3
Samples: 139

Max nTPM: 169.3
Min nTPM: 31.3
Std nTPM: 23.5
Median nTPM: 59.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 169.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 131.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 130.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 124.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 123.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 120.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 115.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 111.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 107.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 104.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 100.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.7
FF:10158-103A5 76 years, female 142.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.2
Sample A Male 4.2
Sample B Male 4.5
Sample C Female 3.2
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68667736 Antisense, RP_050201_02_G06, Mouse strain C57BL/6J (56 days, male) 0.2

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