BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.5 nTPM
HPA:5.5 nTPM
GTEx:77.7 nTPM
FANTOM5:248.7 Scaled Tags Per Million
Mouse:2.6 nTPM
Allen mouse:0.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051768
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.2
2846 Female, age 79, unknown 5.0
2288 Male, age 75, left hemisphere 4.3
1781 Male, age 74, unknown 3.8
1857 Female, age 85, left hemisphere 3.6
2290 Female, age 72, unknown 3.6
1854 Male, age 80, left hemisphere 2.5
2289 Male, age 61, right hemisphere 2.4
2481 Female, age 94, left hemisphere 0.2
Claustrum
nTPM: 5.0
2568 Male, age 61, both hemispheres 7.7
2284 Female, age 91, both hemispheres 5.4
2198 Male, age 80, both hemispheres 5.1
2645 Female, age 72, unknown 5.1
1956 Male, age 74, unknown 4.9
2491 Male, age 75, both hemispheres 4.8
2196 Female, age 79, unknown 4.6
2292 Female, age 85, both hemispheres 4.3
2392 Female, age 94, both hemispheres 2.7
Globus pallidus, externus
nTPM: 1.8
2772 Female, age 79, unknown 2.5
2395 Male, age 75, both hemispheres 2.0
2646 Male, age 61, right hemisphere 1.9
1996 Male, age 80, right hemisphere 1.6
2567 Female, age 72, unknown 1.1
Globus pallidus, internus
nTPM: 2.7
2287 Male, age 75, right hemisphere 5.7
2778 Female, age 91, both hemispheres 4.3
2566 Female, age 72, unknown 3.1
2483 Female, age 94, right hemisphere 1.8
2111 Female, age 85, right hemisphere 1.5
1818 Male, age 74, unknown 1.4
2037 Male, age 80, right hemisphere 0.8
Nucleus accumbens
nTPM: 3.8
2698 Female, age 72, unknown 6.2
2824 Male, age 61, right hemisphere 5.5
1783 Male, age 74, unknown 4.4
1856 Female, age 91, right hemisphere 4.4
1806 Female, age 85, left hemisphere 3.9
2286 Male, age 75, left hemisphere 3.8
2391 Female, age 94, left hemisphere 1.5
2732 Male, age 80, right hemisphere 0.5
Nucleus basalis of Meynert
nTPM: 1.8
2821 Male, age 75, both hemispheres 3.2
2484 Female, age 94, left hemisphere 1.4
2393 Male, age 80, right hemisphere 1.3
2569 Male, age 61, both hemispheres 1.1
Nucleus of the diagonal band
nTPM: 5.5
2195 Female, age 85, both hemispheres 7.4
2029 Male, age 61, right hemisphere 6.4
2775 Male, age 80, right hemisphere 5.0
1812 Female, age 91, both hemispheres 4.4
1979 Male, age 74, unknown 4.3
Olfactory tubercle
nTPM: 4.5
2487 Female, age 94, left hemisphere 5.0
1998 Female, age 91, both hemispheres 4.4
2856 Male, age 75, right hemisphere 4.4
1846 Male, age 80, right hemisphere 4.3
Putamen
nTPM: 2.4
1838 Male, age 80, right hemisphere 4.4
1829 Male, age 74, unknown 3.6
1937 Female, age 91, right hemisphere 3.2
2647 Male, age 75, left hemisphere 2.4
2466 Female, age 79, unknown 2.0
2482 Female, age 94, left hemisphere 1.2
2489 Female, age 72, unknown 0.1
Septal nuclei
nTPM: 4.0
2629 Female, age 94, right hemisphere 7.4
1960 Male, age 74, unknown 6.7
2031 Female, age 72, unknown 5.6
2059 Female, age 85, both hemispheres 3.6
2009 Female, age 91, both hemispheres 2.5
2394 Male, age 61, left hemisphere 1.4
2199 Male, age 80, right hemisphere 0.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 77.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 61.5
Samples: 246

Max nTPM: 141.2
Min nTPM: 0.0
Std nTPM: 26.0
Median nTPM: 60.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 141.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 118.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 118.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 114.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 112.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 111.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 111.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 110.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 106.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 106.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 106.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 77.7
Samples: 246

Max nTPM: 165.8
Min nTPM: 0.0
Std nTPM: 30.0
Median nTPM: 82.6
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 165.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 152.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 148.9
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 147.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 142.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 135.3
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 129.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 127.5
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 126.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 126.0
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 125.3
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Brain - Putamen (basal ganglia)
Average nTPM: 62.1
Samples: 205

Max nTPM: 251.0
Min nTPM: 0.0
Std nTPM: 29.0
Median nTPM: 59.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 251.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 139.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 117.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 112.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 111.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 111.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 110.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 110.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 109.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 109.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 106.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 248.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 144.7
FF:10164-103B2 76 years, female 144.7
Globus pallidus
Scaled Tags Per Million: 118.4
FF:10161-103A8 76 years, female 120.8
FF:10175-103C4 60 years, female 116.0
Nucleus accumbens
Scaled Tags Per Million: 238.1
FF:10037-101F1 23-56 years, mixed 238.1
Putamen
Scaled Tags Per Million: 248.7
FF:10176-103C5 60 years, female 248.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.9
Sample A Male 0.9
Sample B Male 1.3
Sample C Female 1.0
Sample D Female 1.3
Septum
nTPM: 2.6
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.1
Sample A Male 3.2
Sample B Male 3.0
Sample C Female 2.2
Sample D Female 2.1
Ventral forebrain
nTPM: 2.3
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.8
Sample A Male 1.8
Sample B Male 3.3
Sample C Female 2.0
Sample D Female 2.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68667736 Antisense, RP_050201_02_G06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.5
68667736 Antisense, RP_050201_02_G06, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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