BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:8.7 nTPM
HPA:8.7 nTPM
GTEx:9.8 nTPM
FANTOM5:8.8 Scaled Tags Per Million
Mouse:2.7 nTPM
Allen mouse:1.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.7
1857 Female, age 85, left hemisphere 10.6
2481 Female, age 94, left hemisphere 10.2
2290 Female, age 72, unknown 9.8
2288 Male, age 75, left hemisphere 9.0
2289 Male, age 61, right hemisphere 8.8
1854 Male, age 80, left hemisphere 7.7
2846 Female, age 79, unknown 7.1
1781 Male, age 74, unknown 6.3
Claustrum
nTPM: 6.6
2568 Male, age 61, both hemispheres 9.7
2645 Female, age 72, unknown 8.8
2284 Female, age 91, both hemispheres 7.9
2198 Male, age 80, both hemispheres 7.2
2491 Male, age 75, both hemispheres 6.7
2196 Female, age 79, unknown 5.3
1956 Male, age 74, unknown 4.8
2392 Female, age 94, both hemispheres 4.7
2292 Female, age 85, both hemispheres 4.3
Globus pallidus, externus
nTPM: 3.8
2646 Male, age 61, right hemisphere 5.6
2567 Female, age 72, unknown 3.8
1996 Male, age 80, right hemisphere 3.6
2772 Female, age 79, unknown 3.6
2395 Male, age 75, both hemispheres 2.6
Globus pallidus, internus
nTPM: 3.7
2483 Female, age 94, right hemisphere 6.4
1818 Male, age 74, unknown 4.0
2037 Male, age 80, right hemisphere 3.8
2111 Female, age 85, right hemisphere 3.3
2566 Female, age 72, unknown 3.2
2778 Female, age 91, both hemispheres 2.6
2287 Male, age 75, right hemisphere 2.4
Nucleus accumbens
nTPM: 6.6
2286 Male, age 75, left hemisphere 10.4
1806 Female, age 85, left hemisphere 8.9
1783 Male, age 74, unknown 8.1
2824 Male, age 61, right hemisphere 6.4
2391 Female, age 94, left hemisphere 5.7
1856 Female, age 91, right hemisphere 5.6
2732 Male, age 80, right hemisphere 4.3
2698 Female, age 72, unknown 3.8
Nucleus basalis of Meynert
nTPM: 6.2
2484 Female, age 94, left hemisphere 7.8
2569 Male, age 61, both hemispheres 6.7
2393 Male, age 80, right hemisphere 6.5
2821 Male, age 75, both hemispheres 3.8
Nucleus of the diagonal band
nTPM: 8.0
2029 Male, age 61, right hemisphere 9.7
2775 Male, age 80, right hemisphere 8.9
2195 Female, age 85, both hemispheres 7.5
1979 Male, age 74, unknown 7.3
1812 Female, age 91, both hemispheres 6.4
Olfactory tubercle
nTPM: 7.1
2487 Female, age 94, left hemisphere 7.9
2856 Male, age 75, right hemisphere 7.2
1846 Male, age 80, right hemisphere 7.1
1998 Female, age 91, both hemispheres 6.1
Putamen
nTPM: 8.4
2489 Female, age 72, unknown 10.3
2647 Male, age 75, left hemisphere 10.1
2466 Female, age 79, unknown 8.6
1829 Male, age 74, unknown 7.7
1838 Male, age 80, right hemisphere 7.7
2482 Female, age 94, left hemisphere 7.4
1937 Female, age 91, right hemisphere 6.7
Septal nuclei
nTPM: 6.7
2059 Female, age 85, both hemispheres 8.0
1960 Male, age 74, unknown 7.9
2031 Female, age 72, unknown 7.0
2009 Female, age 91, both hemispheres 6.8
2629 Female, age 94, right hemisphere 6.2
2199 Male, age 80, right hemisphere 5.9
2394 Male, age 61, left hemisphere 5.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.8
Samples: 246

Max nTPM: 24.0
Min nTPM: 2.8
Std nTPM: 3.5
Median nTPM: 9.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 24.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 22.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 21.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 20.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 19.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 18.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 18.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 18.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 18.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 17.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 17.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.9
Samples: 246

Max nTPM: 19.1
Min nTPM: 1.8
Std nTPM: 3.0
Median nTPM: 7.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 19.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 18.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 17.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 17.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 16.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 15.8
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 15.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 15.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 14.6
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 13.9
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 13.7
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Brain - Putamen (basal ganglia)
Average nTPM: 8.7
Samples: 205

Max nTPM: 20.6
Min nTPM: 2.7
Std nTPM: 2.8
Median nTPM: 8.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 20.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 18.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 17.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 16.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 15.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 14.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 13.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 13.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 13.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 13.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 13.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.8
FF:10164-103B2 76 years, female 8.8
Globus pallidus
Scaled Tags Per Million: 5.8
FF:10175-103C4 60 years, female 7.8
FF:10161-103A8 76 years, female 3.7
Nucleus accumbens
Scaled Tags Per Million: 7.2
FF:10037-101F1 23-56 years, mixed 7.2
Putamen
Scaled Tags Per Million: 5.4
FF:10176-103C5 60 years, female 5.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.4
Sample A Male 2.6
Sample B Male 2.8
Sample C Female 3.1
Sample D Female 2.4
Septum
nTPM: 2.7
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.4
Sample A Male 3.2
Sample B Male 2.8
Sample C Female 2.5
Sample D Female 2.4
Ventral forebrain
nTPM: 2.5
Samples: 4

Max nTPM: 2.9
Min nTPM: 2.1
Sample A Male 2.1
Sample B Male 2.9
Sample C Female 2.6
Sample D Female 2.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
69526504 Antisense, RP_050421_01_A02, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 1.5
69526504 Antisense, RP_050421_01_A02, Mouse strain C57BL/6J (56 days, male) 1.5

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